Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00631 ATGGGGAAGAAAAAACAGGACGGAGAAACAAGTGAAGATGGAGGAAATCATAAGAAAGTTGAAGATAAAAGCCACAAAGCATATGATAATGATACTATGATGTTTATATCAATGTCTCAAGAGTTGAAAGATGAAGGGAACAAGTTGTTTCAAAAGAGAGATCCTCGAGAAGCTTTGGTAAAATATGAGAAGGCCCTTAAATTGCTTCCAACAAATCATGTAGATGTGTCCTATATACGGAGTAACATGGCTGCGTGCTACATGCAAATGGGGCTCAATGAGTATCCTAGAGCAATCCATGAATGCAATTTGGCTCTTGAAGTAACACCAAAATATAGTAAAGCTCTGATGAAAAGGGCAAGGTGTTATGAGGCTTTAAATAGGCTAGATTTTGCACTAAGAGATGTTAGCACTATTTTGAAGATGGATCCAAATAATATTATGGCATTGGAAATATTAGATAAGGTGAAACATGCACTTGAAGATAAGGGGTTAGTAGTAAATGATACGGAAATTGAGTTGCCTCCTGATTATGTTGAACCACCTTTTACTTTACCTCTAAAAGAAGTAGTGAAAAAAAAGACACAAAAAAAGAAGAAGAACAAAGAGAAGGCTAATCTTCCTAATAAAATTGAAGAAAAACAACCTGAGGATAAATTGGAAGAGAATAAAGTTGAGGAAAAATTGAAAGAAAAGAAAGTTGATGACAACATTCTAGTAAAAATAAATGGGGGTAGTCAGAAAGAGAAGAAGGCTAAGAAATCTAAAAGGAAGGCCAAGGAAAAAGTTGATGAAAAGAAGGATGTTGTTAAGGAGGTTATTGAGGAAAAAAGTAATGATAAAAGTGAAGGTATACCTAAGAAGACAACAAAACTTATTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGTAACCTCTTTCAATTAAGAGAAGTTATTTGTGATCGATTCCCTAGAGTAGGAGCATTTCTTGTCAAATATAGGGACCATGAGGGTGATCTGGTCACTATCACTTGTGATGAAGAATTAAGGTGGGCTGAAATAGGAGCACAAGGTTCTATCCGATTGTACATAGTGGAAGCTAATCCTGATCATGACCCATTCTTTCAAAATATTAATGTAAAGAATAAACAAACGGTTAACATTGATAATTCTCCTGTGAATGGTTCTGTGGTGAAAGCGAAGGACATCATTAGCTCCTCTTGCATTGAGGATTGGATAATTCATTTTGCACAACTATTCAAGAACCATGTTGGGTTTGAATCTAACAAATATTTAGATTTTCATGAACTTGGGATGAAGTTATATTTAGAGGCTTTGGAGGAGACAATTATAAGTGAGGAAGCACAATGCCTATTTGACATGGCAAGTGGTAAATTCCAAGAAATGACAGCTCTAGCGTTGTTTAATTGGGGAAATGTGCATATGTCCAATGCAAGGAAGAAAGTATATTTAACAGAGAATTCTTCTAAAGAACATGTGATTGAACAAATCAAAAGTTCATATGATTGGGCACATGAAGAATATGAAAAGGCTGGAGAAAAATATGAAACAGCCATTGAAATTAAGCCAGATTTTTATGAAGGGTTTTTAGCACTAGGCCAGGAGCAGTTTGAGGAAGCAAAACTTTCTTGGAATTATGCACTCTGTAGTAATGTAGATTTCGCAACATGGCCCTCCATTGAGGTTCTTCAATTGTACAACAGTGCTGAGGATAATGTGGAGAAAGGAATGTTGATATGGGAAGAATCAAGAGAGGAACAATTGAGTGAAACCTCTTATCCTAATGACATTAGATTACATTTGCAGAACATGGGGTTGGATATGCTATTCAAAAATATGTCATCAAATGAAATTTTTGCGCATGTAGAAAATATGAGGTCACAAATAAATCTTCTATGGGGTACTATGTTATACGAACGCTCAATAGTGGAATTTAAATTAGGGCTACCTGAATGGCATGAGTGTTTAGAAGCTGCAATTGAGAAGTTTGAACTTGTTGGAGCTTCTACAACAGATATAGCTATGTTATTGAAGAACCATTGTTCAAATAACACTAATGTAGATGGTCTTGGATTAAAAAATGATGAAATTATACAAACATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAGAGTGTTCCATCGTTTCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCAAAAATTTACCATGCCTTCGAGCTTGTATGA 2226 0.3531 MGKKKQDGETSEDGGNHKKVEDKSHKAYDNDTMMFISMSQELKDEGNKLFQKRDPREALVKYEKALKLLPTNHVDVSYIRSNMAACYMQMGLNEYPRAIHECNLALEVTPKYSKALMKRARCYEALNRLDFALRDVSTILKMDPNNIMALEILDKVKHALEDKGLVVNDTEIELPPDYVEPPFTLPLKEVVKKKTQKKKKNKEKANLPNKIEEKQPEDKLEENKVEEKLKEKKVDDNILVKINGGSQKEKKAKKSKRKAKEKVDEKKDVVKEVIEEKSNDKSEGIPKKTTKLIFGEDIRWAELPVNCNLFQLREVICDRFPRVGAFLVKYRDHEGDLVTITCDEELRWAEIGAQGSIRLYIVEANPDHDPFFQNINVKNKQTVNIDNSPVNGSVVKAKDIISSSCIEDWIIHFAQLFKNHVGFESNKYLDFHELGMKLYLEALEETIISEEAQCLFDMASGKFQEMTALALFNWGNVHMSNARKKVYLTENSSKEHVIEQIKSSYDWAHEEYEKAGEKYETAIEIKPDFYEGFLALGQEQFEEAKLSWNYALCSNVDFATWPSIEVLQLYNSAEDNVEKGMLIWEESREEQLSETSYPNDIRLHLQNMGLDMLFKNMSSNEIFAHVENMRSQINLLWGTMLYERSIVEFKLGLPEWHECLEAAIEKFELVGASTTDIAMLLKNHCSNNTNVDGLGLKNDEIIQTWNEMYEAKKLQKSVPSFRLEPLFRRRISKIYHAFELV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00631 741 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Cca09g00631 741 SUPERFAMILY TPR-like 426 578 IPR011990 GO:0005515
Cca09g00631 741 MobiDBLite consensus disorder prediction 205 223 - -
Cca09g00631 741 Gene3D - 282 364 - -
Cca09g00631 741 CDD PB1 291 361 - -
Cca09g00631 741 Pfam PB1 domain 289 362 IPR000270 GO:0005515
Cca09g00631 741 PANTHER PROTEIN CLMP1 3 740 IPR044517 -
Cca09g00631 741 Coils Coil 256 276 - -
Cca09g00631 741 SUPERFAMILY TPR-like 39 162 IPR011990 GO:0005515
Cca09g00631 741 ProSiteProfiles PB1 domain profile. 287 364 IPR000270 GO:0005515
Cca09g00631 741 MobiDBLite consensus disorder prediction 1 26 - -
Cca09g00631 741 Gene3D Tetratricopeptide repeat domain 448 609 IPR011990 GO:0005515
Cca09g00631 741 SMART tpr_5 39 72 IPR019734 GO:0005515
Cca09g00631 741 SMART tpr_5 113 146 IPR019734 GO:0005515
Cca09g00631 741 SMART tpr_5 77 112 IPR019734 GO:0005515
Cca09g00631 741 MobiDBLite consensus disorder prediction 192 223 - -
Cca09g00631 741 SUPERFAMILY CAD & PB1 domains 289 373 - -
Cca09g00631 741 PANTHER PROTEIN PHOX3 3 740 - -
Cca09g00631 741 SMART PB1_new 287 364 IPR000270 GO:0005515
Cca09g00631 741 ProSiteProfiles TPR repeat profile. 113 146 IPR019734 GO:0005515
Cca09g00631 741 Gene3D Tetratricopeptide repeat domain 33 170 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00631 Cca-Chr9 17855353 17858707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00631 22 146 Calmodulin-binding Proteins AT3G25230 32.374 2.58e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00631 - - gmx:100820306 1112.83