Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00629 ATGCAGCCCTGTAGCAGAGAAATGCAAGGACTCAACTCTCTCTTAAACTCCTCCCAAATCTCCCTCCAGGACCTTCACAACCACAACGCCATCAACCAGATCCAAAATTCACACATGAACCAACACCAACAACAACTCACCCCTCACTTCGACCCAACCTCCCACGACGACTTCCTCGACCAAATGCTCTCCTCCTGCTCCTGGCCCGACCTCGCCCCAAACAAGCCCTTGTGGGACCCCAACCCCCCCACTTCCGACGAAACGACGCCGTCCAACAACGACAATGTCGCTTTCCCCTACGACGAGCACTCCAGCTTAGCCTCCAAGTTCCGCAACCACCAGATCAGCACAAAGAACAACGCAGCTCTCATTCTTCACCAACAACTCCTCATGTCCCGAGCCCCCGACTCTGGCCTCCTCAACTTGCCCCTCAACTTGCCCGGAAACGATGTCGTTGACGCCTCCAACTTCAAATCCCCAAATCCCGGAGGTGAGGCTTCAGTCCAAGCTCTCTACAACGGCTTCACTGGATCTCTGCATGGCGCTGGTCAAGCCTCTAACCAGACTCAGCATTTTCAACACCTTCAGGGAAGCTCGAATCCGGTGCATGGGCAGAATTTTGGTGGCACGGCGAACCAAGCTCCGGCGAGTGGGGCCACCGGTGGCACGCCGGCGCAGCCCAGGCAGAGGGTTCGGGCGAGGAGGGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATCGCTGAGAGAATGAAGGCCCTACAGGAACTAGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTGGCTCCCCTTGTTGCTGATATGTCCTCTGAGGGAGGCGGTGACTGCATCCAAGCAAACGGCAACAGTAACGGCGGTGGGGCCCTCGCCCAAAATTCCAACAACAACAACCAAACGACAGCGTCAACGTCAAACGACACCCTGACGATGACGGAGCACCAGGTAGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTtgcctcatgcccatttccctcgccacggccatctccactgccacgtgtcactccaGGAACCCCTTGATCACCGCCGCCTCCGCCGGCAACCAGATTCCGACCAACGCCGCCCACGCGAACCCCGCAGCCGCGTCCAACGGCGAAGGGCCGTCGTCCCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCCGTGGTGGGCAATGACGGCGCCGTCAAGGACGCTGCCTCCGTTTCGAAGCCGTGA 1377 0.5577 MQPCSREMQGLNSLLNSSQISLQDLHNHNAINQIQNSHMNQHQQQLTPHFDPTSHDDFLDQMLSSCSWPDLAPNKPLWDPNPPTSDETTPSNNDNVAFPYDEHSSLASKFRNHQISTKNNAALILHQQLLMSRAPDSGLLNLPLNLPGNDVVDASNFKSPNPGGEASVQALYNGFTGSLHGAGQASNQTQHFQHLQGSSNPVHGQNFGGTANQAPASGATGGTPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNSNGGGALAQNSNNNNQTTASTSNDTLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLITAASAGNQIPTNAAHANPAAASNGEGPSSPSMSVLTVQSAVVGNDGAVKDAASVSKP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00629 458 MobiDBLite consensus disorder prediction 181 224 - -
Cca09g00629 458 Coils Coil 458 458 - -
Cca09g00629 458 Gene3D - 232 294 IPR036638 GO:0046983
Cca09g00629 458 PANTHER TRANSCRIPTION FACTOR BHLH69 46 405 - -
Cca09g00629 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 405 - -
Cca09g00629 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 297 IPR036638 GO:0046983
Cca09g00629 458 Pfam Helix-loop-helix DNA-binding domain 242 287 IPR011598 GO:0046983
Cca09g00629 458 MobiDBLite consensus disorder prediction 81 99 - -
Cca09g00629 458 MobiDBLite consensus disorder prediction 181 245 - -
Cca09g00629 458 MobiDBLite consensus disorder prediction 412 438 - -
Cca09g00629 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Cca09g00629 458 MobiDBLite consensus disorder prediction 73 99 - -
Cca09g00629 458 SMART finulus 243 292 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00629 Cca-Chr9 17592890 17597392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00629 214 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.121 4.43e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g00629 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00629 - - gmx:100807286 600.897