Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00626 ATGGAAGCTAGTACTGGACTTTTTGCTGGTACTCCAAACAGCAATGAGCTTGTGGTCATCCAAGGACACGATGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTATGTGAGATATGTAGCGATTCTGTGGGACTCACAGTGGATGGAGACTTATTTGTAGCTTGTGAAGAATGTGGTTTCCCTGTGTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGTTGGGagatgaagatgaagatgacgtggatgatattgaacatgaattcaagaatgaagagatgcaggaagggaatattatccatggagatgatgatgGGAATTCTAAATCAACACCAGTAGGCTTAGCAAAGGTAAGTCTGAGAAGGAAGCAGAATCCTACATTCAAGTTAAATGTAACTTCATACTTACCACTCAGCCTGGCATCAGGATTCTCAGAATCAGATAAAACAAGACTGATAATAATTTTTTCCAATAAAGATAGCTTCAATCCGTTGCTTAAACTTTCTAAAAGGCTTTCATTAGTTTCTTTATTCTTCATTGACTCAGAAAACTCTTTGCTGCAGGTTATTTGGTTCATGAGGTACTTAAGGACCGCCCCTGGAATTAGCTCATGCTCATCCATGTTTGAACCGAAGAACAAGCCCAATATGCTTTCTCCAATAGATATCTTTGTCACCACTGCGGATCCAATGAAGGAACCGCCTCTAGTTACCGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGATGGGGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACCGCTGACTTTTCCAGAAAGTGGGTACCTTTCTGCAAAAAATTCTCTGTAGAGCCTAGAGCACCAGAAAAGTACTTCTCTGAGAAGATAGATTTTCTAAAGGATAAGCTTCAATCAACTTATGTTAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACATCATGGCCAGGAAACAACCCCAAAGACCATCCAAGTATGATACAAGTTCTTCTTCCTCGCAATGGAGGTAATGAACTTCCCTGCCTTGTATACACGTCTCGTGAGAAAAGGCCTGCATTTCTACACCACAGCAAAGCGGGTGCAATCAACGCCTTGCTTCGCGTATCGGCTGTGTTAAGCAATGCTCCTTTTGTGATCAACTTGGATTGCAATCACTATGTGAATAACAGCAAAGTTGTGCGACAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATTGGCTTTGTTCAGTTTCCAATAAGATTTGACAGCCTTGATAGGAATGATCGATATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCATCCTATGTTGGTTCAGGATGTATATTCAGAAGGAAAGCCTTAACTGGCTTCGATTCTCCAAAGACTTCAAAACGCCCAAGAACGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAACAAGCATAACAGCAACAGATGAGGACAAGGAGCTATTGAAGTCACAGATGAATGATGAGAATAAATTTGGAAACTCCACACTTTTTATGAACTCTTCAGTAACAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAAGAAGCCCTACTTAAAGAAGCCATTCATGTCATGAGTTCTAAATACGAAGACAGAACTCTTTGGGGATATGAGGTGGGTTTGAGCTATGGATCTATAGCAGCAGAAACATTGACAAGTTTGAAGATGCATTGTCGTGGCTGGAGGTCTGTGTATTGCATGCCAGAGAGAGATCCATTCAGGGGCACAGCTCCTATCAATCTCACAGATAGACTCAACCAGGTGCTTAGATGGGCAGTGGGATCACTTCAGATTCTATTCAGCCGCCATTGCCCACTTTTCTATGGCTTCAATGGAGGAAGACTCAAGGGCCTCCAAAGAATTGCCTATATAAACAGCACTGTCTACCCGTTCAGCTCAATACCCCTCCTAATATATTGCATCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGCACATTTGCAAGTCTAGTCTTCATTGCATTGTTCATCTCAATCTTCGCCTCAGCGATTCTTGAGTTGAGGTGGAGTGGAGTTAGCCTCGAGGAGTGGTGGAGAAGCCAGCAATTCTGGGTCATTGGAAGTGTCTCTGCAAACCTCTTTGCCGTTATGCAAGGCATCATGGGAGCCCTACCACTAGGCAGAGTGAACACAAACTTCAGCATAGTCTCAAAGGCACCAGATGATGTAGAGTTTCGTGAACTCTATGCCATTAGATGGACAGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTGTTGTGGCTGGCTTCACTGATGCCATAAACAGTGGTGAACACTCTTGGGGTGCATTGCTTGGGAAACTCTTCTTCTCTTTGTGGGTCATTGTGCATTTGTACCCTTTCCTTAAGGGTCTAATGGGAAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTATTGGCCTCTATCTTCTCCTTGGTTTGGGTCAGAGTTGACCCTTTTGTGTTGAAAACTAAGGGGCCTGATGTCATGCAATGTGGTATCAGTTGCTGA 2808 0.4192 MEASTGLFAGTPNSNELVVIQGHDEPKPVKNLDGQLCEICSDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVLGDEDEDDVDDIEHEFKNEEMQEGNIIHGDDDGNSKSTPVGLAKVSLRRKQNPTFKLNVTSYLPLSLASGFSESDKTRLIIIFSNKDSFNPLLKLSKRLSLVSLFFIDSENSLLQVIWFMRYLRTAPGISSCSSMFEPKNKPNMLSPIDIFVTTADPMKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETADFSRKWVPFCKKFSVEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETSWPGNNPKDHPSMIQVLLPRNGGNELPCLVYTSREKRPAFLHHSKAGAINALLRVSAVLSNAPFVINLDCNHYVNNSKVVRQAMCFFMDIQLGNGIGFVQFPIRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPSYVGSGCIFRRKALTGFDSPKTSKRPRTVQVHSKQDENGEETSITATDEDKELLKSQMNDENKFGNSTLFMNSSVTEEGGVDPSSSQEALLKEAIHVMSSKYEDRTLWGYEVGLSYGSIAAETLTSLKMHCRGWRSVYCMPERDPFRGTAPINLTDRLNQVLRWAVGSLQILFSRHCPLFYGFNGGRLKGLQRIAYINSTVYPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLVFIALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVMQGIMGALPLGRVNTNFSIVSKAPDDVEFRELYAIRWTALLIPPTTIIIINLIGVVAGFTDAINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVMQCGISC 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00626 935 MobiDBLite consensus disorder prediction 540 562 - -
Cca09g00626 935 PANTHER CELLULOSE SYNTHASE 228 935 - -
Cca09g00626 935 PANTHER CELLULOSE SYNTHASE 1 129 - -
Cca09g00626 935 SUPERFAMILY Nucleotide-diphospho-sugar transferases 257 751 IPR029044 -
Cca09g00626 935 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 388 532 IPR029044 -
Cca09g00626 935 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 339 IPR029044 -
Cca09g00626 935 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Cca09g00626 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Cca09g00626 935 SUPERFAMILY RING/U-box 21 107 - -
Cca09g00626 935 Pfam Cellulose synthase 547 928 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca09g00626 935 Pfam Cellulose synthase 243 540 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca09g00626 935 Coils Coil 341 361 - -
Cca09g00626 935 MobiDBLite consensus disorder prediction 530 562 - -
Cca09g00626 935 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Cca09g00626 935 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cca09g00626 935 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 228 935 - -
Cca09g00626 935 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00626 Cca-Chr9 17253844 17267592 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00626 228 935 Cell Wall Biosynthesis AT5G17420 66.300 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00626 K10999 - gmx:100777270 1541.55