Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00625 ATGGCTTTGTCACTGTGGAGAAGTCGCACTGCATCATCAGCACTGAACTTGTTCACCAATGCTGTTCGTCGTTCCTCTTCTGAGGTGACAAACAGCAGTCCTTATAGTACACGAGAGAGTATGATGAGTCAAATGATGTATTCTGACATAAACTCACAAATTGGGAGTTGCATGCCACTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCTGGAACTAGTGCAAAGATCTTGAAAGAGCCCACTTCGACATACTGTTTAATCCAACTGCCCTCGGGTGTTAAAAAGTTTATTGATTCTCGATGCAGGGCCACTGTTGGTGTTGTGTCTAATCCAAGCCATGGGGATTGCAAGCTTAGGAAGGCCGGACATAGCCGATGGCTTGGCCGAAGACCGGTTGTTCGAGGAGTGGCAATGAATCCCGTAGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGTCGATGGGGGCGAGGATCTCGCACTCCTTGGGGTAAGCCAACTAAATGTGGCTACAAGACTGGACCCTTGAAGCGCAAAAGGTAG 600 0.4867 MALSLWRSRTASSALNLFTNAVRRSSSEVTNSSPYSTRESMMSQMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSTYCLIQLPSGVKKFIDSRCRATVGVVSNPSHGDCKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGRGSRTPWGKPTKCGYKTGPLKRKR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00625 199 TIGRFAM rplB_bact: ribosomal protein uL2 48 197 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Cca09g00625 199 Pfam Ribosomal Proteins L2, C-terminal domain 53 183 IPR022669 GO:0003735|GO:0005840|GO:0006412
Cca09g00625 199 SUPERFAMILY Translation proteins SH3-like domain 54 190 IPR008991 -
Cca09g00625 199 Gene3D Ribosomal protein L2, domain 3 125 199 IPR014726 -
Cca09g00625 199 Gene3D - 48 124 IPR014722 -
Cca09g00625 199 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 33 199 - -
Cca09g00625 199 SMART Ribosomal_L2_C_2 52 185 IPR022669 GO:0003735|GO:0005840|GO:0006412
Cca09g00625 199 PANTHER RIBOSOMAL PROTEIN L2 33 199 IPR002171 GO:0003735|GO:0005840|GO:0006412
Cca09g00625 199 MobiDBLite consensus disorder prediction 154 199 - -
Cca09g00625 199 ProSitePatterns Ribosomal protein L2 signature. 147 158 IPR022671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00625 Cca-Chr9 17163479 17167055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00625 21 164 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 37.908 2.09e-23 92.4