Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00622 ATGCAGCAAGGTGATCCAACTGTCCTAAGCTTGAGGCCTGGTGGTGGTCGCGGCGGTGGAAGCAGGCTTTtctcctctccctctccctccgccgatctcccgctcacgcgcccCCATGCCGCCTTCTCTCTCAAGACTGGTGATTCACGGTTTGAGGGTCGTGAACGTGTGCGGTATACCAGAGATCAGCTTGTACAGCTTAGAGAGGTTGTTGAGGTCTCTGATGATATTCTAAAGATTAAACAAGATATAGAAGCTGAGCTTTTTGGTGAAGATCAAAGTTGGGGCCGTGCTGAAATCAATCTTCCTCATCAATTACAAAATAGGTACTCTGAGCCAGATAACCGTGATTGGCGTGGTCGTTCTGGTCAACTTCCTGCTAATCCAGATGAGAGGTCTTGGGACAATAGACAGCAGGATGCTGGTCAGGTTAATCGCCATGACCAACTTAATTCCCAGTTTGCAAGGACACAAATCTCTTCTACGCAAGGGGGAGGACCTACTCCTACGCTAGTCAAGGCTGAGGTTCCATGGTCAGCTAGAAGGGGAAGTCTCTCTGACAAGGATCGTGTCTTAAAGACTGTGAAAGGAATAATGAATAAATTGACTCCTGAGAAATTTGATGTCCTGAAGGGTCAGTTAATCGATTCTGGCATTACATCAGCTGAAATCTTGAAGGATGTCATTTCACTTATTTTTGATAAGGCTGTTTTAGAACCTACATTTTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGAAGAACCTGGTGGGAAAGAAATCACCTTTAAGAGAGTACTCCTGAATATTTGCCAGGAGGCTTTTGAAGGTGCTGAAAATCTGAGGGAGGAAATAAAAAGGATGACTGCCTCTGAGCAGGAGACGGAGCGTATGGACAAGGAAAGACTGATCAAGATTCGTACCCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAAAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCGGAGAGCAAGTCTTGTCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCATTACTATTGGCAAGCAGCTAGATGAAAGTCCTAAATCACGGCGTATAAATGATATTTACTTTAGCCGATTGAAAGAACTGAGCACAAACCAACAACTTGTACCCCGGCTTAGGTTCATGATTCGGGATGTTATAGAGTTGCGTGCTAATAATTGGGTTCCTAGACGTGAAGAGGTCAAAGCGAAAACCATTAATGAAATTCACTCCGAGGCAGAAAAAAATCTTGGTTTGCGGCCAGGTGCCACTGCAAGTATTAGAAATACCCGTGGTGGTATTCAAGGAAATGCCAGCTCTGGGGGCTTTCCTATTGCTCGACCTGGTACAGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGATTTGATAACGACAACTGGGAGATTCCTAAGACTAGATCCATGCCAAGAGAGTTGTCAGGTGTTCAAGCTGCTGGACGCAGCAACTCTTCTTTACCCTCAAAGCCCACAACCCTTAATTCGAAATTGCTACCTCAAGGTAGTGGTGGTATTGTAAGTGGAAGAAATAGTGCCCTAGTACATGGAGGTGGTACAATTTCTGCTCGCCCGACAAGCTTTGGTTCAAGTCCTGAGGCAGCACCTCAACTCCCTTCACCTGCTAAAACCGTTACTCCTGTTCCTGTGTCCTTTGAGAAGCCACAAGCTCCAGCTCCAAAATTGAAGACTGATGATCTTCACCGCAGAACTGTCTCTATTCTAGAGGAGTATTTCAGTATTCGGCTTTTGGATGAGGCATTACAATGTTTGGAGGAATTAAAATCTCCTTCTTACCACCCTGAGGTTGTTAAGGAAGCCATCTCCCTTGCACTCGATAAAAGTCCACCGTGTGTTGAACCTGTTGCCAATCTCATTGAGTATCTGTATATTAAGAAGATTCTTACTCCTATAGACATAGGGACTGGCTGTTTGTTGTTTGGTTCTCTGCTGGATGATATTGGGATAGATTTACCTAAAGCACCAAGTAATTTTGGTCAGATAATTGGGAAACTAATTGTGGCTGGAGGTTTGGATTTTAAGGTGGTGAAAGAGATTCTGAAGAAGGTGGATGATGACATGTTCCAGAGAGCAATATTTGAGAGTGCGGTAGGGGCCATTAGATCTGCTTCTGGGCAAGCTGTGTTGGATTCACAAACATCTGATATTGAGGCTTGCCAGAGTCTGCTCAAGTGA 2307 0.4387 MQQGDPTVLSLRPGGGRGGGSRLFSSPSPSADLPLTRPHAAFSLKTGDSRFEGRERVRYTRDQLVQLREVVEVSDDILKIKQDIEAELFGEDQSWGRAEINLPHQLQNRYSEPDNRDWRGRSGQLPANPDERSWDNRQQDAGQVNRHDQLNSQFARTQISSTQGGGPTPTLVKAEVPWSARRGSLSDKDRVLKTVKGIMNKLTPEKFDVLKGQLIDSGITSAEILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPGGKEITFKRVLLNICQEAFEGAENLREEIKRMTASEQETERMDKERLIKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPESKSCPVEENVEAICQFFITIGKQLDESPKSRRINDIYFSRLKELSTNQQLVPRLRFMIRDVIELRANNWVPRREEVKAKTINEIHSEAEKNLGLRPGATASIRNTRGGIQGNASSGGFPIARPGTGGLMPGMPGTRKMPGMPGFDNDNWEIPKTRSMPRELSGVQAAGRSNSSLPSKPTTLNSKLLPQGSGGIVSGRNSALVHGGGTISARPTSFGSSPEAAPQLPSPAKTVTPVPVSFEKPQAPAPKLKTDDLHRRTVSILEEYFSIRLLDEALQCLEELKSPSYHPEVVKEAISLALDKSPPCVEPVANLIEYLYIKKILTPIDIGTGCLLFGSLLDDIGIDLPKAPSNFGQIIGKLIVAGGLDFKVVKEILKKVDDDMFQRAIFESAVGAIRSASGQAVLDSQTSDIEACQSLLK 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00622 768 Gene3D - 184 419 - -
Cca09g00622 768 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 767 IPR045208 GO:0003743
Cca09g00622 768 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 767 - -
Cca09g00622 768 Pfam MIF4G domain 192 418 IPR003890 GO:0003723|GO:0005515
Cca09g00622 768 SMART if4_15 192 418 IPR003890 GO:0003723|GO:0005515
Cca09g00622 768 MobiDBLite consensus disorder prediction 515 540 - -
Cca09g00622 768 MobiDBLite consensus disorder prediction 106 144 - -
Cca09g00622 768 ProSiteProfiles MI domain profile. 603 725 IPR003891 -
Cca09g00622 768 Gene3D - 596 763 - -
Cca09g00622 768 MobiDBLite consensus disorder prediction 1 41 - -
Cca09g00622 768 Pfam MA3 domain 606 716 IPR003891 -
Cca09g00622 768 SUPERFAMILY ARM repeat 597 741 IPR016024 -
Cca09g00622 768 SMART ma3_7 604 716 IPR003891 -
Cca09g00622 768 MobiDBLite consensus disorder prediction 562 583 - -
Cca09g00622 768 MobiDBLite consensus disorder prediction 510 540 - -
Cca09g00622 768 Coils Coil 280 307 - -
Cca09g00622 768 SUPERFAMILY ARM repeat 186 421 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00622 Cca-Chr9 17110322 17118382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00622 1 766 Eukaryotic Initiation Factors Gene Family AT5G57870 62.312 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00622 K03260 - gmx:100800438 1309.66