LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00617	ATGGCATCTCAAACAAAGGCCCATCGTCCcttcttcttcttcttcctgtgcttattcttcATTTCAAATTTTTCATGCATCATTGCTTCTGTGCCAAAAGAGCAAGAGCAAGATCGAATCTCTTCTCTCCCGGGGCAACCACCAGTGACATTTTCTCAGTTCTCTGGTTATGTCACTGTCAACGAGCAACATGGTCGAGCACTCTTCTACTGGTTCACTCAGGCCACCACTTCCCCCGAGAATAAACCTCTTCTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCATCGGTGGCATATGGAGCATCAGAGGAAATTGGACCATTCCGTATAAACAAAACTGCCTCTTCTCTATATCTTAACAAATATGCATGGAATAAAGAAGCAAATATCCTCTTTCTTGAATCGCCTGCTGGTGTTGGTTTCTCATACACAAATACCAGTTCTGACCTGAAAACTTCTGGGGACAAAAGGACAGCTCAGGATGCTCTCATTTTTCTAATTAGATGGGTGGAAAGATTTCCCCAATATAAATATAGAGAGTTTTACATTGCTGGGGAGAGCTATGCAGGGCATTATGTCCCCCAGTTGGCTAAGAAAGTCCACGATTATAATAAAAACCATCCTCATATCCTCAATCTCAAAGGGTTCATTGTGGGAAATGCTGTGACTGATGACCACTACGATGGGGTTGGAACTGTCACGTATTGGTGGAGCCATTGTATGATATCTGATCAATCATACAAATCAATCCTCAAATACTGTAATTTCGCCGAAAAGAAAACAACCAAAGAATGTGACGATGCAGTGAGTTATGCGGTTAACAAGGAATTTGGAAACATTGATCAATACAGTATCTATACACCTTCGTGCCCAACATCACAAAATGATACTGTGAGGCAATATGCTAGGTTCAAGAGCAGAATTTTACGTAGGATTTCTGGGTATGATCCATGCACTGAGAACTATGCAGAGAAATACTATAATCGTCGTGATGTGCAGAAAGCATTGCATGCAAATGTTACAAAGATTCCTTACAAATGGACTGCTTGCAGTGATGTGCTCAATAAACATTGGAAGGATTCTGAATTTTCCATGTTACCCATTTACAAAGAGTTAATTTCAGCTGGTCTCAGAATCTGGGTTTTCAGTGGAGACACAGATTCAGTGGTTCCTGTAACTGCCACTAGGTTTTCTCTCAGCCATCTCAACCTCACCATCAACACTCGTTGGTATCCATGGTACTCAAGTGGCCAGGTAGGTGGATGGACAGAAGTGTATGATGGACTAACCTTTGCAACAGTAAGAGGAGCTGGACATGAAGTACCATTGTTTCAACCAGAGAGAGCTTACACACTTTTCAAGTCTTTTTTGGAAGGGAAAAAGCTACCAAAATCCTGA	1398	0.4106	MASQTKAHRPFFFFFLCLFFISNFSCIIASVPKEQEQDRISSLPGQPPVTFSQFSGYVTVNEQHGRALFYWFTQATTSPENKPLLLWLNGGPGCSSVAYGASEEIGPFRINKTASSLYLNKYAWNKEANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALIFLIRWVERFPQYKYREFYIAGESYAGHYVPQLAKKVHDYNKNHPHILNLKGFIVGNAVTDDHYDGVGTVTYWWSHCMISDQSYKSILKYCNFAEKKTTKECDDAVSYAVNKEFGNIDQYSIYTPSCPTSQNDTVRQYARFKSRILRRISGYDPCTENYAEKYYNRRDVQKALHANVTKIPYKWTACSDVLNKHWKDSEFSMLPIYKELISAGLRIWVFSGDTDSVVPVTATRFSLSHLNLTINTRWYPWYSSGQVGGWTEVYDGLTFATVRGAGHEVPLFQPERAYTLFKSFLEGKKLPKS	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00617	465	Pfam	Serine carboxypeptidase	45	459	IPR001563	GO:0004185\|GO:0006508
	Cca09g00617	465	Gene3D	alpha/beta hydrolase	34	292	IPR029058	-
	Cca09g00617	465	PANTHER	SERINE CARBOXYPEPTIDASE 24	23	464	-	-
	Cca09g00617	465	ProSitePatterns	Serine carboxypeptidases, serine active site.	183	190	IPR018202	GO:0004185
	Cca09g00617	465	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	23	464	IPR001563	GO:0004185\|GO:0006508
	Cca09g00617	465	Gene3D	-	318	355	-	-
	Cca09g00617	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	120	132	IPR001563	GO:0004185\|GO:0006508
	Cca09g00617	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	133	143	IPR001563	GO:0004185\|GO:0006508
	Cca09g00617	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	169	194	IPR001563	GO:0004185\|GO:0006508
	Cca09g00617	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	429	442	IPR001563	GO:0004185\|GO:0006508
	Cca09g00617	465	ProSitePatterns	Serine carboxypeptidases, histidine active site.	429	446	IPR033124	GO:0004185
	Cca09g00617	465	Gene3D	-	365	459	-	-
	Cca09g00617	465	SUPERFAMILY	alpha/beta-Hydrolases	31	463	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00617	Cca-Chr9	16829648	16842390	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00617	323	462	Calmodulin-binding Proteins	AT2G22960	31.206	1.47e-15	73.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00617	K16297		-	gmx:100785391	790.801