LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00611	ATGTTTGACTGTGGTTACAAGTCGCAATATGTGGGTGGGCAGCGGGAAAAATTTGTGAGGTTGGATGACTTGGATTCTAGACTATCATCATCTTCTGAAGCTGGAGTTAAAACATGCGGATTTAGTATTGATAAATTAAGCCATGGTGGCCATGGAAGCAGTACAACTTCTAGGTCCTTTAAAAGAAGAATTAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGAATTGGGGTATCTTGGGCAGTGTTCCCTGAAGATCTTAAAGTTTCGGAAAAGAAGATATTTGACCCTCAAGACAAATTTTTGCTCTTGTGGAATAAGCTTTTTGTTATATCATGCATTTTGGCTGTGTCTGTTGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATTCATTGCACTGTCTTGGTATAGACCGAAAGTTGGCAATTACAGTTACCACCTTGAGGACATTTATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTTTATTGCTCCGTCCTCTCGAGTTTTTGGACGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAACGATACTTACAGCGGTATTTCATTATTGATTTCCTATCAGTGTTGCCCTTACCACAGATTGTGGTTTGGAGATTTCTGCAGAGGTCAAAAGGTTCAGATGTACTTGCAACAAAGCGGGCTCTTATGTTCATTATTTTGCTTCAGTACATTCCTAGATTTTTCAGGATGGTTCCGTTGACGTCTGAACTTAAGAGAACAGCAGGCGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCGTATTATTTGCTATTATTCATGCTTGCTAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAAAAGGCTTGTAGTGGCAATGGGTATAATAAAAATTTCTTGTATTGTGGTAACCAATACATGGAAGGTTATAGTGCCTGGCAAAGTAGAAGTAAAGATATTCTTATGTCACAGTGCTCTGCAGATAATGATAATTCACCATTTGACTTTGGTATTTTCAAACAAGCCTTGTCATCTGGTATTGTTTCATCTAAGAAGTTCTTTTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTAAGTACACTTGGCCAGGGGCTTGAAACTAGCACCTACACTGGGGAGGTTATCTTTTCAATAGCACTAGCAATAGCTGGCCTTATCCTCTTTGCGCTTCTGATCGGTAACATGCAGACGTATCTTCAATCTCTTACGATTAGACTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATACAAGTGGTTGGCAACACGTGGTGTAGATGAAGACAGTTTGGTTCAGAGTTTGCCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAGTACTTACATTGTCCGCGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATTCGGGGTCGCCTCGAGAGTGTTACTACAGATGGTGGGAGGAGTGGATTCTTTAATCGTGGCTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTGACTTGGGCACTGGATCCCAAAGCTGGCTCTAACCTCCCATCTTCAACTCGAACAGTTAAAGCTTTAACAGAGGTTGAAGCTTTTGCCTTAACTGCTGAAGAGTTAAAGTTTGTTGCCAGTCAGTTTAGGCGTCTGCACAGTAGACAGGTTCAGCACACATTTCGCTTCTACTCCCAACAATGGAGGACATGGGCTGCATGCTTTATTCAAGCAGCATGGCGCCGGTATTCTAAAAGGAAAACTATGGAGCTGAGTCGTAAGGAAGAACCTGAGGAGTCAGAAGGAACTCGTAGCAATGCCAGTGGCAACTCATACAGCCTTGGTGCCACCTTCTTGGCCTCAAGATTCGCTGCAAATGCTCTTCGCGGTGTGCATCGCAATCGGGAAGCCAAGAGTGCCAGGGAGTTAGTGAAACTACAGAAACCTCCAGAGCCTGACTTCACTGCTGATGATGCAGACTAA	2199	0.4311	MFDCGYKSQYVGGQREKFVRLDDLDSRLSSSSEAGVKTCGFSIDKLSHGGHGSSTTSRSFKRRIRKGSEGLKSIGRSLGIGVSWAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDSLHCLGIDRKLAITVTTLRTFIDAFYLIHMALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYLQRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKRALMFIILLQYIPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSGNGYNKNFLYCGNQYMEGYSAWQSRSKDILMSQCSADNDNSPFDFGIFKQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLETSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEDSLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELSRKEEPEESEGTRSNASGNSYSLGATFLASRFAANALRGVHRNREAKSARELVKLQKPPEPDFTADDAD	732

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00611	732	MobiDBLite	consensus disorder prediction	660	674	-	-
	Cca09g00611	732	Gene3D	Jelly Rolls	503	623	IPR014710	-
	Cca09g00611	732	ProSiteProfiles	IQ motif profile.	641	670	IPR000048	GO:0005515
	Cca09g00611	732	PANTHER	NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED	12	729	-	-
	Cca09g00611	732	MobiDBLite	consensus disorder prediction	707	732	-	-
	Cca09g00611	732	Pfam	Cyclic nucleotide-binding domain	527	616	IPR000595	-
	Cca09g00611	732	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	12	729	-	-
	Cca09g00611	732	Gene3D	-	111	430	-	-
	Cca09g00611	732	MobiDBLite	consensus disorder prediction	660	681	-	-
	Cca09g00611	732	SUPERFAMILY	Voltage-gated potassium channels	100	427	-	-
	Cca09g00611	732	Gene3D	Helix hairpin bin	433	496	-	-
	Cca09g00611	732	SUPERFAMILY	cAMP-binding domain-like	434	625	IPR018490	-
	Cca09g00611	732	Pfam	Ion transport protein	108	431	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Cca09g00611	732	CDD	CAP_ED	505	636	IPR000595	-
	Cca09g00611	732	SMART	cnmp_10	505	636	IPR000595	-
	Cca09g00611	732	ProSiteProfiles	cAMP/cGMP binding motif profile.	505	589	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00611	Cca-Chr9	16708347	16719944	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00611	1	730	Ion Channels	AT2G23980	76.267	0.0	1149

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00611	K05391		-	gmx:100820202	1377.84