Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00602 ATGGAAGAGGAAGAACCGACGCAGCAACGAGTCACTCACTCGTCGCTCGCGACCGAGTCACTCACTTCTACTCGTTCCGAAACCCTAGCGCTCTGCTCTTCGCTTCCGCGCGACCACTCTGCTCCTACTCATATGAAGCAGCAGCAGCAGAGAAGCTATGCTAAGGTTGGTGAAACTGAGAATAAGGAGTCAGCTTGGCCTCCTGTTGAGGAAACAATTGTAAAAAGGGCAGTTGAGGCACCTAAAAAACAGACAGAAAATAAACTTAAGGTGTCTGTTTGTTCAACTTCATTGTCTGAACTATCACCAACATCTGTATCACAGTCTTTATCATCTGCCCCATGTACAACCATTCCAGAACAGAGACTGTCTTCTCCTAAGGCTAATAGTGTACAAGTGCCAGAAGTAGACGAAAGAACTCCTTGTGGTGGTACAACCTTATCTTCTGTTTCTGTTGCAAGGGAATCTGCATCTGAATCTGATGGATACAACTGGCGGAAGTATGGCCAGAAGCAAGTGAAGAGTCCTATGGGTTCTCGAAGCTATTACAGGTGTACCCATTCAAATTGTTCTGCTAAGAAGATTAAATTTTGTGACCATTCAGGAAATGTGATAGAGATTGTTCATAAAAGTCAACATAGTCATGATCCCCCACATAAAATTGATTTTGCTAAGGAAAGTAAGTTCCTTCCCTCCAGTGAACCTAAAGTAGAAAGCAGTGTTCCAAAGCAGTCAGTCAGAGTTCTGAATGATTCTAATCCATCATCTTCTCCGAAAGAACCACCTTCCAGTGCTGATAAGAATCTAGAAAACTCATCTAATGGTGAGAATGGTAATGTTATTTTGAAGGAAGAGCATGTTAATGTCACAAAGCCAAAAAGAAGATTGGACAAAGGTGATTTAGCATGCATGGATTCAGCAGTAAAACCTGGAAAGAAACCAAAGTTTGTTGCACATGTGGCGGATGATGAAGGGATATCAGGTGATGGATATCGATGGCGCAAGTATGGACAAAAATTGGTGAAGGGGAATCCATACATCAGAAACTACTACAGATGCACTTTTTCTGGATGTCCTGTTCGGAAGCACGTTGAGACTGCTGTGGATAACTCAAAAGCTCCCATGGTAACATACAAGGGATTACATGATCATGATAAGCCTGTGCCAAAGAAACGGCATGGTCCATCAAGTGCTTCGCATGTGGCTGCTGCAGTACCTGCTTCAACGAACAATTTGGAGAGCAGAAAAACTGGCTTGCTACAAAACCAGGAAACTTCTGAATGCTCAGAGGAAACAGAAGGAGAATTAACTGGCGAAGCGTTGGACCTTGGGGGTGAGAAAGCAATTGAGTCAGCTCGAGCTCTTCTAAGCATAGGCTATGAAATTAAACCTTTTTGA 1398 0.4328 MEEEEPTQQRVTHSSLATESLTSTRSETLALCSSLPRDHSAPTHMKQQQQRSYAKVGETENKESAWPPVEETIVKRAVEAPKKQTENKLKVSVCSTSLSELSPTSVSQSLSSAPCTTIPEQRLSSPKANSVQVPEVDERTPCGGTTLSSVSVARESASESDGYNWRKYGQKQVKSPMGSRSYYRCTHSNCSAKKIKFCDHSGNVIEIVHKSQHSHDPPHKIDFAKESKFLPSSEPKVESSVPKQSVRVLNDSNPSSSPKEPPSSADKNLENSSNGENGNVILKEEHVNVTKPKRRLDKGDLACMDSAVKPGKKPKFVAHVADDEGISGDGYRWRKYGQKLVKGNPYIRNYYRCTFSGCPVRKHVETAVDNSKAPMVTYKGLHDHDKPVPKKRHGPSSASHVAAAVPASTNNLESRKTGLLQNQETSECSEETEGELTGEALDLGGEKAIESARALLSIGYEIKPF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00602 465 MobiDBLite consensus disorder prediction 105 151 - -
Cca09g00602 465 MobiDBLite consensus disorder prediction 379 435 - -
Cca09g00602 465 Pfam WRKY DNA -binding domain 329 384 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 Pfam WRKY DNA -binding domain 161 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 MobiDBLite consensus disorder prediction 10 33 - -
Cca09g00602 465 Gene3D WRKY domain 144 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 Gene3D WRKY domain 313 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 463 IPR044810 GO:0003700
Cca09g00602 465 MobiDBLite consensus disorder prediction 40 55 - -
Cca09g00602 465 MobiDBLite consensus disorder prediction 1 68 - -
Cca09g00602 465 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 9 463 - -
Cca09g00602 465 MobiDBLite consensus disorder prediction 230 294 - -
Cca09g00602 465 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 SUPERFAMILY WRKY DNA-binding domain 323 387 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 MobiDBLite consensus disorder prediction 105 131 - -
Cca09g00602 465 ProSiteProfiles WRKY domain profile. 154 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 ProSiteProfiles WRKY domain profile. 322 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 MobiDBLite consensus disorder prediction 233 279 - -
Cca09g00602 465 MobiDBLite consensus disorder prediction 402 427 - -
Cca09g00602 465 SMART WRKY_cls 327 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g00602 465 SMART WRKY_cls 159 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00602 Cca-Chr9 16397249 16404340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00602 64 463 WRKY Transcription Factor Family AT4G30935 47.549 1.48e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g00602 WRKY 6.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00602 - - ccaj:109819089 847.04