Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00599 ATGGGTTTGGGAGTGTTTGGTTCTGTTCTAGTTCTGACACTCTTCTTCAAGCATTTAGCTTCCCAGCAACCAAACACTGATGATTTCTTTGTGTCTGAATTATTGAAGAAGATGGGTTTAGCATCCTCTCAGGTCTACAACTTTTCTGCTTCTGTTTGTTCATGGCAAGGGGTTTCATGTGATGCCAAGAGAGAACATGTTGTTGGGTTAGTCTTTTCTGGCATGGGCCTCAATGGTCCTATTCCAGATACCACCATAGGCAAGCTCAGCAAGCTTCAATCTTTGGACCTTAGCAACAACAAAATCACTGACTTGCCTTCTGATTTCTGGAGTTTTAGCTTCCTCAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGCTCATTGACTAACAACATTGGAAACTTTGGTTTGCTAGAAGTGTTTGACTTGTCCAGCAACAATTTCTCTGGGGAAATTCCTGAAGCTATTAGTTCCCTCGTGAGTCTGCAGGTTCTCAAACTTGATCACAACAGATTCGAGCAAAGAATACCTTCAGGGATTCTCAAGTGCAACTCTTTAGTTTCAATCGATCTTTCTTCAAATCAGCTGATTGGGACAGTTCCAGATGGTTTTGGTGCTTCTTTTCCTAATCTTATTACCTTGAACCTTGCTGAGAATAGTATTAATGGCAGTGATTTGGATATTTCTGGATTGAAGTCCATTGTGAGTCTCAACATATCAGGCAATTCCTTTCAGGGTTCTGTGACGAGTTTGTTTCAGGGAAGGCTTGAGGTCATGGACCTCAGCAGAAACCATTTTGAAGGTCACATTTCTCAGGTACATTCCATCGCTAATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCAGAGAATCAGCTTAGTGGGGATATTTTCCAAACATTGAATGAATCCAAGAATCTAAAGCACCTTAATCTTGCTCTCAATAGATTTACCAGACAGAAATTTCCCAAAATTGAAATGTTCTCAGGGCAAATCCCTTCACTAAGCAATAAAAACCTCCAAGTTCTGGACCTTTCAAACAACAATTTGAGTGGAGATGTCCCTTCATCAGTCATAGAGAGACTTCCTTTGATGGAGAAATACAACTTCTCTTATAATAACTTAACCTTCTGTGCTTTGGAAATCAAACCAGCTATCCTCCAAACAGCATTCTATGGATCACTGAACAGTTGCCCTATTGCTGCAAACCCAAGTCTCCTCAAAAAAAGAGCCACTCAAAACAAGGGAATGAAGCTAGCTCTGGCATTGACCTTCTCAATGGTCTGCTTGATTGCTGGTCTTTTGCTTCTAGCATTTGGTTGCCTTAAGAAAACAAAACCATGGCCTGTTGTTAAGCAAACTTCGTACAAAGAAGAACACAACATGTCAGGCCCCTTCTCATTCCACACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGACAAGCCACTGCTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGCACCCTTTTGGCTGAAGGAAAATTTGGTCCTGTTTATAGAGGCTTCCTACCTGGTGGCATTCATGTAGCAGTTAAAGTTCTGGTGGTTGGATCTACTCTGACAGATAAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGTAGAATCAAGCACCCTAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGAGATCAAAGGATTGCCATATATGACTACATGGAGAATGGAAACTTGCAAAATCTGCTCTATGACTTGCCACTTGGGGTGCTGCAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAACATGACAATGATGGCATTCAAAATGCTGGTTCAGAAGGAGTGCTCACAACATGGAGATTTCGCCACAAAATCGCACTTGGCACTGCGCGAGCATTGGCCTTTCTGCATCATGGATGTTCCCCACCAATCATCCACAGAGATGTCAAAGCTAGCAGTGTTTATTTGGACTACAACTTGGAGCCAAGACTTTCAGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGCTTGGATGAGGAGATTGCACTTTGTTCACCAGGCTATGTTCCACCAGAGTTTTCTCAACCAGACTTTGACACCTCAACTCCGAAATCCGATGTGTACTGTTTTGGAGTTGTTCTCTTTGAGCTACTAACTGGGAAGAAGCCTGCGGGAGATGATTATGCTGATGAGAAAGAATCTACTTTGGTTAGTTGGGTGAGAGGACTAGTGAGAAAGAACAAAGCTTCAAGAGCTATTGATCCGAAAATTCGTGAAACTGGATCAGAGGAGCAAATGGAAGAGGCCCTTAAGATTGGTTATCTTTGCACTGCTGATCTTCCTTCTAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTCAAAGACATTGAACCTTCTGCTAACTAG 2457 0.4221 MGLGVFGSVLVLTLFFKHLASQQPNTDDFFVSELLKKMGLASSQVYNFSASVCSWQGVSCDAKREHVVGLVFSGMGLNGPIPDTTIGKLSKLQSLDLSNNKITDLPSDFWSFSFLKSLNLSSNQISGSLTNNIGNFGLLEVFDLSSNNFSGEIPEAISSLVSLQVLKLDHNRFEQRIPSGILKCNSLVSIDLSSNQLIGTVPDGFGASFPNLITLNLAENSINGSDLDISGLKSIVSLNISGNSFQGSVTSLFQGRLEVMDLSRNHFEGHISQVHSIANYNWSHLVYLDLSENQLSGDIFQTLNESKNLKHLNLALNRFTRQKFPKIEMFSGQIPSLSNKNLQVLDLSNNNLSGDVPSSVIERLPLMEKYNFSYNNLTFCALEIKPAILQTAFYGSLNSCPIAANPSLLKKRATQNKGMKLALALTFSMVCLIAGLLLLAFGCLKKTKPWPVVKQTSYKEEHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEHDNDGIQNAGSEGVLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIALCSPGYVPPEFSQPDFDTSTPKSDVYCFGVVLFELLTGKKPAGDDYADEKESTLVSWVRGLVRKNKASRAIDPKIRETGSEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPSAN 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00599 818 ProSiteProfiles Leucine-rich repeat profile. 341 363 IPR001611 GO:0005515
Cca09g00599 818 Gene3D Phosphorylase Kinase; domain 1 471 586 - -
Cca09g00599 818 Gene3D Transferase(Phosphotransferase) domain 1 587 818 - -
Cca09g00599 818 Pfam Leucine Rich Repeat 341 359 IPR001611 GO:0005515
Cca09g00599 818 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Cca09g00599 818 ProSiteProfiles Protein kinase domain profile. 511 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00599 818 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 328 - -
Cca09g00599 818 SUPERFAMILY Protein kinase-like (PK-like) 496 810 IPR011009 -
Cca09g00599 818 SMART LRR_typ_2 232 255 IPR003591 -
Cca09g00599 818 SMART LRR_typ_2 112 136 IPR003591 -
Cca09g00599 818 SMART LRR_typ_2 89 111 IPR003591 -
Cca09g00599 818 SMART LRR_typ_2 340 363 IPR003591 -
Cca09g00599 818 SMART LRR_typ_2 160 184 IPR003591 -
Cca09g00599 818 Pfam Protein tyrosine and serine/threonine kinase 515 808 IPR001245 GO:0004672|GO:0006468
Cca09g00599 818 SUPERFAMILY L domain-like 42 404 - -
Cca09g00599 818 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Cca09g00599 818 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 330 815 - -
Cca09g00599 818 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 330 815 - -
Cca09g00599 818 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 328 - -
Cca09g00599 818 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Cca09g00599 818 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Cca09g00599 818 PRINTS Leucine-rich repeat signature 92 105 - -
Cca09g00599 818 PRINTS Leucine-rich repeat signature 339 352 - -
Cca09g00599 818 Gene3D Ribonuclease Inhibitor 279 408 IPR032675 -
Cca09g00599 818 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00599 Cca-Chr9 16244463 16247030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00599 77 813 Receptor kinase-like Gene Family AT5G07280 31.083 3.50e-104 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Cca09g00599 PK_Tyr_Ser-Thr 1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00599 - - gmx:100807051 1447.57