LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00592	ATGGGGCAATCTGGGTGGTCTCAAATTTTAGGCATAGCCACTCTATTGTATTTGTTATGCAGTGGTTTTGCTGCATCTTTTTCCACGGACCACCCATTGCTCCAACAACACAAGGACCGGGTTGGAAGGCTCCCAGGTCAAACCTTCAACATCAGCTTCGCACACTATTCTGGCTATATCACTGTCAATGAAAAATCTGAAAGAACACTCTTCTACTGGTTCATTGAGGCACTTGAAGACCCTCTCTCCAAGCCCCTTGTTTTGTGGCTCAATGGAGGGCCTGGATGTTCGTCCATTGCTTTTGGTCAGTCAGAGGAAATTGGGCCTTTTCATATAAAGTCAGATGCCAACACCCTTTTTCTCAATCCTTATTCTTGGAACCGAGTTGCCAACATTCTTTTTCTTGACACTCCTGTTGGGGTTGGATTTTCATATTCAAATAATGAATCTGACCTGCTGAACAATGGCGATAAGAGGACAGCTGAGGACAACTTAGTATTCCTATTGAAGTGGTTTAAGCGTTTCCCTCAATATAAAGGAAGTGATTTTTTTATCAGTGGTGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGTTATTGTAAAGTACAACTCGGATACTAAGGAAAATGCTATAAATCTGAAAGGTTTCATGGTAGGAAATGCTCTAACAGATGATTTCCATGATCAACTGGGGATGTTCGAGTTTATGTGGTCAAGTGGTTTGATTTCAGATCAAACATACAAGCTTTTGAACCTACTTTGTGATTTTCAGTCAGTTGAGCACCCCTCAGATTCATGTGAAAAAATTTGGGAAATTGCTTATAATGAAATTGGAAATATAGACCCATACAGTCTCTATACACCTCCGTGCAATGCTAATGTTAGCCAGTTAAGTCAGCTGGTGAGAAGAAAACATAGAATTGGTAGACTCAGAGGAGATTATGATCCATGCACCGAATACCACTCCATTGAATACTTCAATAGACCTGAGGTCCAAACAATTCTTCATGTTGATCCAGATCATAAGCCAGCTACATGGGAGACCTGCAGTGAATTGGTAAATACAAACTGGAAGGATTCTCCAAGATCAGTGCTCAATATTTATCATGAACTTATTCACATGGGATTGAGAATATGGGTGTTCAGTGGTAACACAGACACGGTAATACCTGTGACATCTACTCGCTATAGCATAAATGCTCTCAAGCTTCCTACCGTGAGTCCTTGGCGTGCATGGTATGATGATGGGGTGGTAGGAGGATGGACCCAAGAATATGCAGGCCTTACTTTTGTGGCTGTGAGGGGTGCAGGGCACGAAGTTCCTTTGCATAAACCAAAACTTGCTCTAACACTGTTCAAAGCCTTCTTAGCAGGAACATCAATGCCCAATCTTGAACTAGTCAGTGCCTCTTGA	1422	0.4205	MGQSGWSQILGIATLLYLLCSGFAASFSTDHPLLQQHKDRVGRLPGQTFNISFAHYSGYITVNEKSERTLFYWFIEALEDPLSKPLVLWLNGGPGCSSIAFGQSEEIGPFHIKSDANTLFLNPYSWNRVANILFLDTPVGVGFSYSNNESDLLNNGDKRTAEDNLVFLLKWFKRFPQYKGSDFFISGESYAGHYVPQLSQVIVKYNSDTKENAINLKGFMVGNALTDDFHDQLGMFEFMWSSGLISDQTYKLLNLLCDFQSVEHPSDSCEKIWEIAYNEIGNIDPYSLYTPPCNANVSQLSQLVRRKHRIGRLRGDYDPCTEYHSIEYFNRPEVQTILHVDPDHKPATWETCSELVNTNWKDSPRSVLNIYHELIHMGLRIWVFSGNTDTVIPVTSTRYSINALKLPTVSPWRAWYDDGVVGGWTQEYAGLTFVAVRGAGHEVPLHKPKLALTLFKAFLAGTSMPNLELVSAS	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00592	473	ProSitePatterns	Serine carboxypeptidases, histidine active site.	431	448	IPR033124	GO:0004185
	Cca09g00592	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	122	134	IPR001563	GO:0004185\|GO:0006508
	Cca09g00592	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	135	145	IPR001563	GO:0004185\|GO:0006508
	Cca09g00592	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	171	196	IPR001563	GO:0004185\|GO:0006508
	Cca09g00592	473	PRINTS	Carboxypeptidase C serine protease (S10) family signature	431	444	IPR001563	GO:0004185\|GO:0006508
	Cca09g00592	473	Pfam	Serine carboxypeptidase	45	460	IPR001563	GO:0004185\|GO:0006508
	Cca09g00592	473	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 29	13	467	-	-
	Cca09g00592	473	Gene3D	-	367	461	-	-
	Cca09g00592	473	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	13	467	IPR001563	GO:0004185\|GO:0006508
	Cca09g00592	473	ProSitePatterns	Serine carboxypeptidases, serine active site.	185	192	IPR018202	GO:0004185
	Cca09g00592	473	Gene3D	alpha/beta hydrolase	36	295	IPR029058	-
	Cca09g00592	473	SUPERFAMILY	alpha/beta-Hydrolases	41	464	IPR029058	-
	Cca09g00592	473	Gene3D	-	320	358	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00592	Cca-Chr9	15749738	15756937	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00592	378	464	Calmodulin-binding Proteins	AT2G22960	28.409	2.62e-09	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00592	K16297		-	gmx:100805227	828.55