Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00588 ATGTCCAAACCACCCTTACCTGCTAAGAGAGTTCCCGCAGTCCACAGTATAAATTGGCGCAATCTGAATTCGGAAAGCGTCATCAGAATGTTAGTGAGTTCTCTTGAGTCGTTCGAAGGGTTCCACGAGGGATGGGTTCGGCGTCAAGAGAAGTTGTTGCCGCGGCTTCTCAGCGCTGAGAGCGAGGAGCAACAGAAAAGCGTAATCGAGCAAGTTCTGTGTGACTACCAGCAGTTTCTGGAAGAGAAAGCGAGGTTGGCAAACGCTGACGTCTTCCTCCTCTTCTCGGCGCCATGGCTGTCGGCGTACGAGAGGGCGCTCCTCTGGATCGGGGACTACAAGGCGTCGTTGATAGTCCGTCTACTAGAGGGCAGCGTGGAGGGGTTGACGGgggagtag 399 0.5338 MSKPPLPAKRVPAVHSINWRNLNSESVIRMLVSSLESFEGFHEGWVRRQEKLLPRLLSAESEEQQKSVIEQVLCDYQQFLEEKARLANADVFLLFSAPWLSAYERALLWIGDYKASLIVRLLEGSVEGLTGE 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00588 132 ProSiteProfiles DOG1 domain profile. 35 132 IPR025422 GO:0006351|GO:0043565
Cca09g00588 132 PANTHER - 32 131 - -
Cca09g00588 132 PANTHER TRANSCRIPTION FACTOR HBP-1B 32 131 - -
Cca09g00588 132 Pfam Seed dormancy control 56 122 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00588 Cca-Chr9 15691397 15691795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00588 17 130 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 28.814 7.33e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00588 - - ccaj:109790136 263.077