Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00587 ATGCTTGCTACCATTATTCCCGAGGAGGTGAAAGTGGAGCATCAAACTCATGTTATTATTGATAATGTTGATGATAGAAGGAAAACCTTAGCGCACCTTTTCAAGATGCaaatctttgttaagaccctgactggaaagaccataacccttgaggttgagagttcagacacaatcgataatgtcaaggctaagatccaggacaaggagggaatcccaccagaccagcaaaggttgatctttgctgggaagcaattggaagatggaaggactcttgctgactataacattcagaaagagtctactcttcacctTGTGTTGCGTCTTCGTGGTGGATTTTAA 339 0.1622 MLATIIPEEVKVEHQTHVIIDNVDDRRKTLAHLFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00587 112 ProSitePatterns Ubiquitin domain signature. 62 87 IPR019954 -
Cca09g00587 112 SUPERFAMILY Ubiquitin-like 35 111 IPR029071 -
Cca09g00587 112 PRINTS Ubiquitin signature 46 66 IPR019956 -
Cca09g00587 112 PRINTS Ubiquitin signature 88 109 IPR019956 -
Cca09g00587 112 PRINTS Ubiquitin signature 67 87 IPR019956 -
Cca09g00587 112 PANTHER - 36 111 - -
Cca09g00587 112 Pfam Ubiquitin family 38 109 IPR000626 GO:0005515
Cca09g00587 112 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Cca09g00587 112 SMART ubq_7 36 107 IPR000626 GO:0005515
Cca09g00587 112 CDD Ubl_ubiquitin 36 111 - -
Cca09g00587 112 Gene3D - 27 112 - -
Cca09g00587 112 PANTHER UBIQUITIN 36 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00587 Cca-Chr9 15666175 15670544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00587 36 112 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.03e-51 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00587 - K08770 mtr:MTR_7g116360 162.155