Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00586 ATGGGTTTGCTTCCTTTTTCAATGTTTCTATTTCTCTTTATAACCATTGTTCATTCAAGAGTTTATGGGGTGGAAAACATGGCCCTAGTGAATGAAAAAAATTCACTTGCTTTATTCATGTCAGACATTGTTTCTGACCCCAAAAACGTTCTAAAAAGTTGGAAGTCACCAGGGGTACATGTTTGCAATTGGTATGGTGTCAGATGCAACAATGCAAGTGACAAGATCATAGAGCTTGCTCTTAATGGAAGTTCACTAGGGGGCACTATTTCCCCTGCTCTTGCTAACCTATCTTCCTTGCAAATTCTTGATCTTTCTGAGAATTTTTTTGTGGGTCACATTCCAAAAGAACTGGGCTATTTGATTCAGCTCCAACAACTCAGTTTATCTGGGAATTTTCTTCAAGGTAAAATTCCCTCTGAGTTGGGTTCACTTCACAACTTGTACTACCTTAACATGGGAAGTAATCACCTTGAGGCTGAGATTCCACCCTCACTTTTTTGCAATGGGTCTTCCACATTGAGGTATATAGACCTCTCTAACAATTCCTTGGGAGGTCAAATACCCTTGAGAAATGAGTGTATCCTCAAAGAGCTTAAGTTTCTCTTACTTTGGTCTAACAAATTTGTAGGCCATGTTCCTTTTACTCTTTCAAACTCCACAAAACTAAAGTGGCTCGACCTGGAATCAAATAGGTTGAGTGGGGAGTTACCATCTGAAATTGTAAGTAATTGGCCACAACTACAATTCCTCTACCTATCATATAATGACTTTGTTAGCCATGATGGTAACACCAAACTTGAACCTTTCTTCTCTTCCTTGATGAATTTGTCAAACATGCAAGCCCTGGAATTGGCGGGAAACAATCTTGGAGGGAAGCTACCTCATAATATTGGTGATCTTCCTTCTAGCTTGTTACAACTTCACCTAGAAGACAATCTCATACATGGCTCTATATCTCCAAGCATAGCAAACCTTGTCAATCTGACTCTTTTAAACTTCTCCAGCAACTTGCTAAATGGATCAATACCTCCCAGCCTCAGCCAGATGGGGAGGCTAGAGAGGATTTACTTGTCAAATAATTCACTATCAGGTGAGATTCCTTCAACCCTTGGTGACATTCAGCATATGGGGCTACTTGACTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGACACTTTTGCTAACCTCACCCAGTTAAGAAGGCTTTTACTTTATGACAATCAGCTTTCTGGAAACATCCCACCAAGTCTGGGAAAATGTGTAAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGACTGATCCCTAAGGAAGTTGCAGCCTTGACTAGCTTGAAACTATACTTGAATTTATCAAGTAATAACTTAGATGGACCTTTACCATTAGAGTTCTCCAAAATGGACATGGTGCTGGCTATTGACCTATCAATGAACAATCTTTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCATTAGAGTACCTCAACCTTTCTGGTAATTCCTTAGAAGGCCCTCTCCCGGATTCATTGGGCAAATTGCCTTATATTCAAGCACTTGATGTGTCTTCAAATCAATTGACAGGGATAATACCAGATTCCCTTCAGTTGTCCACCCTCAAGAAACTTAATTTCTCTTTCAACAAATTCTCAGGGAGTGTCTCCAGCAAGGGAGCCTTTTCATCTTTGACCATAAACTCTTTCCTAGGAAATGATGGTCTATGTGGCTCGGTTAAAGGCATGCAAAACTGCCACAAGAAACGAAGGTATCATTTGGTTCTCCTACTAATTCCGTTGTTACTATTTGCCACCCCCCTTCTGTGCATGCTGGGGTACCCCACAATAAAAATGTCAAAAGAAAGAATGCAATTGGCTAAAGTTAGCAAAGGGGATTTTGAGGATGAAGATGAGGAAACAAAGGAGCTCAAGTACCCCAGAATTTCATATAAACAACTTATTGAAGCCACAGGAGGCTTTAGTGCTTCAAGCCTAATTGGTTCTGGTCGGTTTGGACAAGTCTACGAAGGTGTTCTTGGAGATAACACAAGAATAGCAGTGAAGGTGTTAGACACAACAACAGCTGGTGAGATTTCAGGGAGCTTTAGAAGGGAATGCCAAATCCTGAAGAGGACCAGGCACAGGAATTTAATAAGGATCATCACAATTTGCAGCAAAAAAGAGTTTAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGTCTTGAGAGGCACTTATATCCGAGACATGGATTGAGCCAAAGATTGGATATGGTTCAGTTGGTGAGGATATGCAGCGATGTAGCTGAAGGAATGGCCTATTTACACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCGAGCAATATACTACTTGATGACGATTTGACAGCTTTGGTAACTGATTTTGGTATTGCTAGGCTTGTAAAAGGTGACAACAACATCCCCACAAGTGACTCATCTTTCAGTTCAACACATGGCTTGTTATGTGGCTCCGTTGGCTACATAGCTCCTGAGTATGGAATGGGAAAACATGCATCAACTCAAGGTGATGTTTACAGTTTTGGTGTACTAGTGCTAGAAATAGTGACAGGTAGACGCCCAACAGAGGTCCTTGTCCATGAAGGGTCTTGTTTGCATGAGTGGGTTAAGAGACAATATCCGCTCCAGCTTTGTAACATTGTTGAACAAGCATTGCAAAGGTTTTCTCCTTCTGACATTCCTAGTCACTGCCACAAAATTGGGCAAGATGTTATGTTGGAACTCATAGAGTTGGGGCTTCTGTGCACACACCCTAATCCTTCAACAAGACCAAGCATGCTTGATGTGGCACAAGAAATGGGGAATTTGAAGGAGTACCTTTCTCATATATCATCTTCTCTGCTGATTCAAGATAAATTCAAGCCAGAAAGTAAATAA 2940 0.4105 MGLLPFSMFLFLFITIVHSRVYGVENMALVNEKNSLALFMSDIVSDPKNVLKSWKSPGVHVCNWYGVRCNNASDKIIELALNGSSLGGTISPALANLSSLQILDLSENFFVGHIPKELGYLIQLQQLSLSGNFLQGKIPSELGSLHNLYYLNMGSNHLEAEIPPSLFCNGSSTLRYIDLSNNSLGGQIPLRNECILKELKFLLLWSNKFVGHVPFTLSNSTKLKWLDLESNRLSGELPSEIVSNWPQLQFLYLSYNDFVSHDGNTKLEPFFSSLMNLSNMQALELAGNNLGGKLPHNIGDLPSSLLQLHLEDNLIHGSISPSIANLVNLTLLNFSSNLLNGSIPPSLSQMGRLERIYLSNNSLSGEIPSTLGDIQHMGLLDLSRNKLSGSIPDTFANLTQLRRLLLYDNQLSGNIPPSLGKCVNLEILDLSHNKISGLIPKEVAALTSLKLYLNLSSNNLDGPLPLEFSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGKLPYIQALDVSSNQLTGIIPDSLQLSTLKKLNFSFNKFSGSVSSKGAFSSLTINSFLGNDGLCGSVKGMQNCHKKRRYHLVLLLIPLLLFATPLLCMLGYPTIKMSKERMQLAKVSKGDFEDEDEETKELKYPRISYKQLIEATGGFSASSLIGSGRFGQVYEGVLGDNTRIAVKVLDTTTAGEISGSFRRECQILKRTRHRNLIRIITICSKKEFKALVLPLMPNGSLERHLYPRHGLSQRLDMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDLTALVTDFGIARLVKGDNNIPTSDSSFSSTHGLLCGSVGYIAPEYGMGKHASTQGDVYSFGVLVLEIVTGRRPTEVLVHEGSCLHEWVKRQYPLQLCNIVEQALQRFSPSDIPSHCHKIGQDVMLELIELGLLCTHPNPSTRPSMLDVAQEMGNLKEYLSHISSSLLIQDKFKPESK 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00586 979 PRINTS Leucine-rich repeat signature 425 438 - -
Cca09g00586 979 PRINTS Leucine-rich repeat signature 519 532 - -
Cca09g00586 979 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Cca09g00586 979 SMART LRR_typ_2 97 121 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 423 445 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 374 397 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 398 422 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 519 542 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 145 169 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 221 244 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 326 350 IPR003591 -
Cca09g00586 979 SMART LRR_typ_2 277 301 IPR003591 -
Cca09g00586 979 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Cca09g00586 979 Gene3D Ribonuclease Inhibitor 27 193 IPR032675 -
Cca09g00586 979 Gene3D Transferase(Phosphotransferase) domain 1 741 969 - -
Cca09g00586 979 SMART serkin_6 664 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00586 979 PANTHER OS04G0122200 PROTEIN 22 958 - -
Cca09g00586 979 SUPERFAMILY Protein kinase-like (PK-like) 645 952 IPR011009 -
Cca09g00586 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Cca09g00586 979 Gene3D Phosphorylase Kinase; domain 1 625 739 - -
Cca09g00586 979 CDD STKc_IRAK 670 957 - -
Cca09g00586 979 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Cca09g00586 979 SUPERFAMILY L domain-like 40 261 - -
Cca09g00586 979 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Cca09g00586 979 Pfam Leucine Rich Repeat 424 442 IPR001611 GO:0005515
Cca09g00586 979 Pfam Leucine Rich Repeat 498 519 IPR001611 GO:0005515
Cca09g00586 979 Pfam Protein kinase domain 666 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00586 979 SUPERFAMILY L domain-like 328 581 - -
Cca09g00586 979 ProSiteProfiles Protein kinase domain profile. 664 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00586 979 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 22 958 - -
Cca09g00586 979 Gene3D Ribonuclease Inhibitor 194 592 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00586 Cca-Chr9 15545640 15549344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00586 10 959 Receptor kinase-like Gene Family AT3G47110 34.645 4.65e-160 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca09g00586 Pkinase 3.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00586 - - lang:109346572 1430.23