Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00585 ATGTGTGTGAATATGCTAAGCCTCCAGAAACACTATCTTCACTCATTTCCCTCGCTACCCTTCTACCTCGTAGTATGCCTCTGGCCACTACACGTGATGGCAACAGCTAGGGAGGTTATGATACCAATAGGGGTACTTCTTGATTTGAACTCTCCAATTGGAAGCATGGCTAATAGCTGCATATGGATCGCATATCATGATTTCTATGAGCAGCATCCTGGCTTTCGAACCAGACTTGATCTTCGAACAAGAGACTCTGACCGTGATACAGTCACAGCAGCATATGCAGCCTCTGATTTAATAAGTAAGGAAAAGGTAAAAGCAATTATTGGGCCTCAAACATCTGAACAAGCAAGGTTTGTGATAAATCTTGGGCGCGAACATAACATCCCCATTATCTCATTCTCCGCCACGAGTCCATCTCTCTCCGCAACCCGCACTCGCATGTTCATACGCACAGCACCAAACGATTCCTCTCAGGTGAAAGCCATAGCAGCCATTGCGGAATCATATGGCTGGCGCGAACTCATCATCGTATACGAAAACACCGAATACGGAAACGGCCTCGTCCCACATCTCGTTGATGCCTTGGAGGCAGTTGACACAAAAGTGCCTTTCAGAAGCGTCATCGACCCCAACTCCGACGAGTCCCACATCGTGGAGGAGCTCGAAAGGCTCAAGCAAAAGTCAATAAGAGTGTTTCTCGTTCACATGAGGGGTGAACACGGGTCGAGACTCTTTTCGGCGGCGGAGAAAGTTGGGATGATGAGCGAAGGGTACGGTTGGGTGGTGACACAAGGCTTGTCCTCGCAGTTAGATCCTTCGGGTTCGGAGAGAGTGGAGAACATGCAAGGTGTCTTGGGAGTAAGGCCGAAAGTGAGAAAAAGTGAAAAACTCGAGGACTTTAAGAAGAGATGGAAAGCTTTGTCGGTTAAGGGACATGAAGAGATCAATATCAATAGCATGACATTGTTCGGGTTGTGGGCTTATGATACGATGTGGGCCTTAGCCATGGCTGCGGAAAATGCAAGCGGTTGTGGGTCCCTTGTGAGCGCAATCATGGCTACGAAATTCGAGGGCGTTTCTGGTGATTTTGATTTGAAGGGAGGGGAGTTAGAGGCTTCGGTGGTTGAAGTGTTCAATGTGGTGGGACATAAAGAGAGGGTGATTGGGTATTGGAGCAATGAAAGAGGACTATTCCGTGAGGACCCACCGAATGTTACGCAAGGGAAACAGATACTGAAGCAACCGGTTTGGCCCGGTTACACCACGGATGAGCCACCCATGTTGAGATTTGGGGTACCCGTCAGAAAGGGTTTCACTGAGTTTGTGAAAGTCGAAAGGGTCTTTCCCTCTAACGCCACCAAGATTTCTGGGTTCGTTGTTGATGTGTTTTTAGAGGCTGTGAAGGCTTTGCCTTTCCCCATTTCGTACGAATTCATCCCCTTGGATAACTATGAGGCACTTGGTGGGTCTCATGGAGACAAAAATTCCAGGGAGTTCGATGCCGGAGTTGGAGACGTATCAATAGTTTATTATAGGACAAATTATTTCGATTTCACGTTGCCTTATTTAGAATCAGGGGTCTCAATGGTGGTTTCAATGAAACATGATCAGAGACGAAACATGTGGATATTCTTGAAGCCTCTAAGTTGGGGTCTTTGGTTGACTACTGGTGCCGCCTTAGTCCTCACTGGTTTCGTTGTGTGGTTTCTAGAGCACCGCTCAAACGCAGCCTTTAGTGGGACCCCAGACCAACAACTTGGCATTGTTTTTTGGTTTTCCTTCTCAACACTTGTCTTTGCTCATCGGGAAAGATTAGTGAGTAACTGGTCGAGATTTGTGCTTATTGTATGGGTATTTGTAGTGCTCATCATCACCCAGAGTTACACTGCCAGTTTAGCGTCAATGCTAACAATAGAAAGCCTCCGACCAGAATTCATTGACATTAAAGAGATAAAAAGGAATAATTACTTTGTGGGGTATCAGAACCAATCCTTTGTGAAAACCATTTTAATAAACCAATTAGGATTCAGTGAGTCCCGACTGAAGGCTTATAATACTCCTGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAATGGCGGGGTAGCAGCTATATTTGATGAAACTCCCTACATCAACGTTTTTCTCTCAAAATATGACGTTGGATATGCTGTGGTGGGACCGATTTATAAAACAAACGGATTTGCCTTTGCATTTCATCGAAAATCACCTCTTGTGTCATATTTTTCGAGGGCTATCCTAAATATCATAGAAGATAGAGACAAGTTTGAAGGAATTAAGAATAAGTATTTCTTAACAAGAATTGTCCCCAAAGATCAAAGTGCCTCAACTGCAGACAGTCCAAGTCTTACGGTTAAGAGCTTTGCTGGTCTTTTCATTGTCACGATCATTACCTCATTTCTATCATTCTTATTTTATGTGTTTAGTTTTTTATACTCTCAACGATCTACTCTGAGAAGCATTAATTATGAACAAACATCATTTTGGTCATTAGTGGTTCACATTGTAAAGCATTTTGATCGAAAACATAATTCTTTTCATCCTACAATGGATAGAAGTCAATCTAGAGTACAACCAACAAGAAGTCTAGAGACCACTTATCATTCTAATGTTGTTACTTTAAATGAAGACACTTATTCAATGTAG 2676 0.4376 MCVNMLSLQKHYLHSFPSLPFYLVVCLWPLHVMATAREVMIPIGVLLDLNSPIGSMANSCIWIAYHDFYEQHPGFRTRLDLRTRDSDRDTVTAAYAASDLISKEKVKAIIGPQTSEQARFVINLGREHNIPIISFSATSPSLSATRTRMFIRTAPNDSSQVKAIAAIAESYGWRELIIVYENTEYGNGLVPHLVDALEAVDTKVPFRSVIDPNSDESHIVEELERLKQKSIRVFLVHMRGEHGSRLFSAAEKVGMMSEGYGWVVTQGLSSQLDPSGSERVENMQGVLGVRPKVRKSEKLEDFKKRWKALSVKGHEEININSMTLFGLWAYDTMWALAMAAENASGCGSLVSAIMATKFEGVSGDFDLKGGELEASVVEVFNVVGHKERVIGYWSNERGLFREDPPNVTQGKQILKQPVWPGYTTDEPPMLRFGVPVRKGFTEFVKVERVFPSNATKISGFVVDVFLEAVKALPFPISYEFIPLDNYEALGGSHGDKNSREFDAGVGDVSIVYYRTNYFDFTLPYLESGVSMVVSMKHDQRRNMWIFLKPLSWGLWLTTGAALVLTGFVVWFLEHRSNAAFSGTPDQQLGIVFWFSFSTLVFAHRERLVSNWSRFVLIVWVFVVLIITQSYTASLASMLTIESLRPEFIDIKEIKRNNYFVGYQNQSFVKTILINQLGFSESRLKAYNTPEEYHEALSKGTNNGGVAAIFDETPYINVFLSKYDVGYAVVGPIYKTNGFAFAFHRKSPLVSYFSRAILNIIEDRDKFEGIKNKYFLTRIVPKDQSASTADSPSLTVKSFAGLFIVTIITSFLSFLFYVFSFLYSQRSTLRSINYEQTSFWSLVVHIVKHFDRKHNSFHPTMDRSQSRVQPTRSLETTYHSNVVTLNEDTYSM 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00585 891 SUPERFAMILY Periplasmic binding protein-like I 41 394 IPR028082 -
Cca09g00585 891 PIRSF IGluLR_plant 14 348 IPR017103 -
Cca09g00585 891 PIRSF IGluLR_plant 344 889 IPR017103 -
Cca09g00585 891 SMART GluR_14 429 776 IPR001320 GO:0015276|GO:0016020
Cca09g00585 891 Pfam Ligand-gated ion channel 776 807 IPR001320 GO:0015276|GO:0016020
Cca09g00585 891 CDD GluR_Plant 430 774 - -
Cca09g00585 891 PANTHER GLUTAMATE RECEPTOR 40 824 - -
Cca09g00585 891 Gene3D - 63 162 - -
Cca09g00585 891 CDD PBP1_GABAb_receptor_plant 43 401 IPR044440 -
Cca09g00585 891 Gene3D - 427 542 - -
Cca09g00585 891 Gene3D - 543 676 - -
Cca09g00585 891 SUPERFAMILY Periplasmic binding protein-like II 428 776 - -
Cca09g00585 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 824 - -
Cca09g00585 891 Gene3D - 163 321 - -
Cca09g00585 891 Pfam Receptor family ligand binding region 76 383 IPR001828 -
Cca09g00585 891 Pfam Bacterial extracellular solute-binding proteins, family 3 454 775 IPR001638 -
Cca09g00585 891 PRINTS Metabotropic glutamate GPCR signature 109 135 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cca09g00585 891 PRINTS Metabotropic glutamate GPCR signature 141 160 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cca09g00585 891 PRINTS Metabotropic glutamate GPCR signature 160 176 IPR000337 GO:0004930|GO:0007186|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00585 Cca-Chr9 15522374 15529301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00585 25 857 Ion Channels AT2G29110 42.189 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00585 K05387 - gmx:100799966 1242.64