Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00584 ATGCATGGAACTCTTCATTATTCCCTTCTATGTCCGTCTTTTCTCCTTCTATGCCTATGGGGAAGACCCTTCCTTGATGCAAAAGAAGCTATACCAATACCAATAGGGGTAGTTCTTGATTTGAACTCCTCGATTGGAAGTGTTTCTAATAGCTGCATATGGATGGCATACCAAGATTTCTATCAGCGCCACCCTCATTACAAAACTAGACTTACTCTTCAGACCCGAGATTCTGAGCAAAATGTGGTCACAGCAGCATCTGTAGCTCAAGAATTGTTAAATGAGAAGGTGCATGCAATCATTGGACCACAAACATCAGAACAAGCTTGGTTTGTTATAGAACTTGGAAGCAAAGCTCAAGTGCCCGTAATCTCATTTTCTGCCACAAGTCCATCACTTTCCTCGACTCAAAAACCTTATTTCATTCGCACAGCACGGGATGATTCCTCTCAGGTGGAAGCTATATCAGACATTGTCGAAGTTTATGGTTGGCGTGAAATCGTCCCCATATATGAAGACACTGAATATGGCAATGGTCTTAACTTGTATCTACACGATGCCTTTGTAAATATTGGCACGCGAGTGCCTTATAGATGTGTCATTGGTCCACACTTTGGGGTTGAAGAAATATCGAAAGAGCTCGAGAAGGTGAAGTGCATGGCAACAAAAGTGTTCCTTGTTCACATGAGCAGTGAAGTTGGGTGTAAGTTGTTTCTGGCTGCAAAGAAATCAGGGATGATGGCAAAGGGGTATGCATGGATAGTTACTGAAGGCCTATCTGCAGAGGTAGACCCTATGATCTTAAAATGCATGGATTCCATGCAAGGTGTTTTGGGAGTTAGGCCAAGGCCAAACCACTCCAAAAGGCTTGAAAACTTCAAAGAAAGATGGAAGGTGTTATTATCAGGTAAAGGAAACAATGAGTCCAATGGGACAAATGTGACCATCTTTGGATTGTGGGCTTATGACACTGTTTGGGCATTAGCCAAGGCAGTGGAGAATGTTTGGAAGCAAAACGCTCTCTCCCAAAACCATAATGCTACAAATACTACCCTTCTTAACACAATCCTGGCTACCAAGTTCCATGGCCTCTCTGGGAGTTTCCATTTGGTTAAAGGACAACTAGAGCCATCAACTCTTGAAGTGTTCAATGTTGTGGAACAAAGTGAGAGGAGTATTGCAAATTGGATGCCAGAGAGAGGGCTTTCTAAATTAAAGCAACCAAAATGGCCAGGTAACACAACAGAGCCCCCAGCAAAGTTGAGGATTGGAATCCCTCCTACAAACAGTGTCAATGAATTCAAGAAAGTTCTGAACTTCTCTTTTGATGTGTTTTTCGAAGCCTTGAAGATTTTACCCTTTCCCCTGCATTATGAATTCACCCCTTACAAGATACATGGTTCCTATGATGAACTTCTTATGCAAATTAAGGAAAAGAGGTATGATGCTGTGGTGGGGGACGTGACAATTGTGGCTAACCGCTCAAATTATGTTGATTTTACCATGCCATTTTCGGAATCAGGCGTGGCCATGTTGGTTTTGGCGAAGCATGACGAGAGGCAAAACATTTGGATTTTCCTGAAGCCATTTAGTTGGGACCTTTGGTTGACGACTGGTGCAGCTTTCATCTTCATAGGTTTCATCGTTTGGTTCATTGAACACCGCTCTAACTCAGAGTTCAGAGGCACTCCAAAGAACCAACTCGGCATGGCTCTTTGGTTTTCTTTCTCAACACTCGTCTTTGCTCACAGGGAGAGGGTAGTAAACAATTGGTCTCGATTTGTGCTGATTATATGGTTCTTTGTTGTACTCATAATCACGCAAAGTTATACTGCAAGTTTAGCTTCAATTCTGACTGTACAGAAACTTCAGCCTGCGTTTATGGACGCAGAAGAGATCAAAAGAAACAATTACTTAGTGGGATATCATCAGGATTCCTTTGTGAGAGGGCTACTAATTGAAAAGTTAGGATTCAAAGAATCTAAGTTAAAGGGCTACGATGGGCCTGAGGCCTATCAACATGCTCTGTCCCTGGGAAGCAACAATGGAGGAGTTGCTGCTATTTTTGACGAAATTGTCTTTATTAACCTCTTCCTCATGAAATATGGCTCCAAAAAGTATCAGATGGTTGGGCCAACATACAAAACCGATGGATTTGCCTTCGCATTCCCACGAAACTCTCCATTGGTCCCTTACTTTTCGAGGGCAATCACAAATGTGACCGAAAATAGAACTACATTTGATGGGATTAAGAAGAAGTACTTCTCAAGCGACGTGATGAGTGAAGATGCAAGTACCTCAATGGCATTAGAAAGCCCAAACTTAACTTTAAAGAGCTTTGGGGGGCTTTACATCATCACATTGCTCACTTCATTGCTAGCACTCACGGTCCGTTTGTTTAAGATGATACATTCCAAATTCATTGCTCGAGACTTTCAAAGATCCCTTTCCGAGATGATGATTGAATTGGAAAAGCATTTCAACAAAGAAGAGAGCTCTTTACATTCTCCTCAAAATAGTACTCCAGGAATGGAGTAA 2538 0.4212 MHGTLHYSLLCPSFLLLCLWGRPFLDAKEAIPIPIGVVLDLNSSIGSVSNSCIWMAYQDFYQRHPHYKTRLTLQTRDSEQNVVTAASVAQELLNEKVHAIIGPQTSEQAWFVIELGSKAQVPVISFSATSPSLSSTQKPYFIRTARDDSSQVEAISDIVEVYGWREIVPIYEDTEYGNGLNLYLHDAFVNIGTRVPYRCVIGPHFGVEEISKELEKVKCMATKVFLVHMSSEVGCKLFLAAKKSGMMAKGYAWIVTEGLSAEVDPMILKCMDSMQGVLGVRPRPNHSKRLENFKERWKVLLSGKGNNESNGTNVTIFGLWAYDTVWALAKAVENVWKQNALSQNHNATNTTLLNTILATKFHGLSGSFHLVKGQLEPSTLEVFNVVEQSERSIANWMPERGLSKLKQPKWPGNTTEPPAKLRIGIPPTNSVNEFKKVLNFSFDVFFEALKILPFPLHYEFTPYKIHGSYDELLMQIKEKRYDAVVGDVTIVANRSNYVDFTMPFSESGVAMLVLAKHDERQNIWIFLKPFSWDLWLTTGAAFIFIGFIVWFIEHRSNSEFRGTPKNQLGMALWFSFSTLVFAHRERVVNNWSRFVLIIWFFVVLIITQSYTASLASILTVQKLQPAFMDAEEIKRNNYLVGYHQDSFVRGLLIEKLGFKESKLKGYDGPEAYQHALSLGSNNGGVAAIFDEIVFINLFLMKYGSKKYQMVGPTYKTDGFAFAFPRNSPLVPYFSRAITNVTENRTTFDGIKKKYFSSDVMSEDASTSMALESPNLTLKSFGGLYIITLLTSLLALTVRLFKMIHSKFIARDFQRSLSEMMIELEKHFNKEESSLHSPQNSTPGME 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00584 845 Gene3D - 67 377 - -
Cca09g00584 845 PIRSF IGluLR_plant 5 843 IPR017103 -
Cca09g00584 845 Pfam Ligand-gated ion channel 757 789 IPR001320 GO:0015276|GO:0016020
Cca09g00584 845 Gene3D - 418 523 - -
Cca09g00584 845 PANTHER GLUTAMATE RECEPTOR 33 804 - -
Cca09g00584 845 CDD GluR_Plant 420 755 - -
Cca09g00584 845 Pfam Receptor family ligand binding region 55 386 IPR001828 -
Cca09g00584 845 Pfam Bacterial extracellular solute-binding proteins, family 3 458 756 IPR001638 -
Cca09g00584 845 SUPERFAMILY Periplasmic binding protein-like II 420 758 - -
Cca09g00584 845 SMART GluR_14 420 757 IPR001320 GO:0015276|GO:0016020
Cca09g00584 845 Gene3D - 524 648 - -
Cca09g00584 845 Gene3D - 147 402 - -
Cca09g00584 845 SUPERFAMILY Periplasmic binding protein-like I 32 412 IPR028082 -
Cca09g00584 845 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 804 - -
Cca09g00584 845 CDD PBP1_GABAb_receptor_plant 35 404 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00584 Cca-Chr9 15479478 15484517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00584 33 840 Ion Channels AT2G29100 41.618 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00584 K05387 - gmx:100800495 1319.29