Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00578 ATGCCAGATTTGGGAAACTTATCTTTCTCTGCGACTCTCACTCTCTCTCACTGCTCCTCCGATGTCGCCGACGCTCCCGTCAAAACCCTACCCGATGCCTTCGGTTCCGACCCTCCCTTCGAGCCTCGCGTTTTGAAGCGCACCCGCGGCTCCCTCGATCGAGTCACCGACACGCCCTTCCAGGATCGCCTCAAACACCCCTTCCCTCTTCCATTTCTCGTTGGCGCTCCCAAGATGAGTGAATGTTGCTTTTGCCGCCATTTTATCGACCCTGGGGAGGAGCTCTTGTGTTCTGTCCGCGGATGCGACGCGCCCTACCATTTGGATTGTGCAAAAGAAGCTGTTGGGCCTTCCAGTCTGAAGAAATTCAAGTGTCCACAGCATGTATGCTTCATTTGCAAGAAAAATAAGAACTTGAGGTGTGTGTGTTGTAATATTGCATTCCACAGTAAATGTTCACCATGGCCAGATGCAGTGTTGCATCTAAAAGATCATCCTGGGAAAGCTGTTTGTTGGAGGCATCCTTCTGATTGGCGTCTGGATAGAAAGCATGATGCTTCAACAAGTGATATTTCGGAGGTATTTTGTCGCTTGCCTCTTCCATTCATCAGTGAGGAGTTTAAGATTGACTTCAATTGGAAAGATATGGACAGTAAGATGGAGCAACCACCACCATATGTACACATAAGGCGCAATATATACTTAGTAAAGAAGAAACGTAGTGACGTGGATGATGGTGCAGGGTGCACAAGTTGCAGTTCTACATGTTCTGATGATTGTGTGTGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCACTGTTCAGAAAATTGCAATAATCGGCCATTTCGCAAGGAGAGAAAGATCAAGATTGTTAAGACTGAACTTTGTGGATGGGGAGTGGAGGCCGCTGAAACAATCGGTAAAGGTGGATTTATAATTGAGTATATTGGAGAAGTCATTGACGATGCCTTATGTGAAAAAAGGCTTTGGGACATGAAATACAGAGGGGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACATTCAAAGGAAATACTTCACGCTTTTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAAAAGTGGCAAGTTGATGGTGAAACACGTGTGGGTGTATTTGCTGCTCGTTCCATAAAAGCTGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCTACTGTGGCGCAGCAAATTGTCAAGGCTTTCTAGGGACGAAAAAGAAAATTGGGAAGCTGGAACTCTGTTGGGGTTCAAAACTGAAAATCAGCCATGAAGGGATGGATGAGTGA 1359 0.4555 MPDLGNLSFSATLTLSHCSSDVADAPVKTLPDAFGSDPPFEPRVLKRTRGSLDRVTDTPFQDRLKHPFPLPFLVGAPKMSECCFCRHFIDPGEELLCSVRGCDAPYHLDCAKEAVGPSSLKKFKCPQHVCFICKKNKNLRCVCCNIAFHSKCSPWPDAVLHLKDHPGKAVCWRHPSDWRLDRKHDASTSDISEVFCRLPLPFISEEFKIDFNWKDMDSKMEQPPPYVHIRRNIYLVKKKRSDVDDGAGCTSCSSTCSDDCVCRVQCISCSKACHCSENCNNRPFRKERKIKIVKTELCGWGVEAAETIGKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGAANCQGFLGTKKKIGKLELCWGSKLKISHEGMDE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00578 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 177 IPR013083 -
Cca09g00578 452 ProSiteProfiles AWS domain profile. 245 288 IPR006560 GO:0005634|GO:0018024
Cca09g00578 452 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 69 444 - -
Cca09g00578 452 CDD SET_ASHR3-like 289 427 - -
Cca09g00578 452 Gene3D SET domain 200 436 IPR046341 -
Cca09g00578 452 ProSiteProfiles SET domain profile. 288 405 IPR001214 GO:0005515
Cca09g00578 452 PANTHER SET DOMAIN PROTEINS 69 444 - -
Cca09g00578 452 SMART PHD_3 81 129 IPR001965 -
Cca09g00578 452 SMART PHD_3 130 175 IPR001965 -
Cca09g00578 452 SMART set_7 288 411 IPR001214 GO:0005515
Cca09g00578 452 Pfam SET domain 299 404 IPR001214 GO:0005515
Cca09g00578 452 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 452 IPR025787 -
Cca09g00578 452 SUPERFAMILY FYVE/PHD zinc finger 80 135 IPR011011 -
Cca09g00578 452 SMART PostSET_3 411 427 IPR003616 -
Cca09g00578 452 ProSiteProfiles Post-SET domain profile. 411 427 IPR003616 -
Cca09g00578 452 SUPERFAMILY SET domain 211 417 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00578 Cca-Chr9 15295261 15307750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00578 269 426 C2H2 Transcription Factor Family AT2G23740 36.313 1.81e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca09g00578 SET 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00578 - - aprc:113859744 799.275