Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00577 ATGGGGAAGCATCAAACACACAAAATCAATAATGGGAGCACTAACAATAACCTTAATGCAACTAACACCGTGACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGATTCTCCACCTCAACGTAGCTCAATATATAGAGGAGTCACTAGGCACCGATGGACAGGCCGATATGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGACGATGAAGAAGCCGCAGCACATGCTTATGATCTAGCAGCATTGAAGTACTGGGGTCAAGATACCATTCTTAATTTTCCGTTGGCGACCTACCAGAATGATCTGAAAGAAATGGAGGGTCAATCCAGGGAGGAGTACATTGGATCACTAAGGAGGAAAAGCAGCGGATTTTCCCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCACAACGGAAGGTGGGAGGCTCGTATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTATGCGACCCAAGAAGAAGCTGCCACAGCATATGACATGGCAGCAATTGAATATCGAGGACTGAACGCCGTCACAAATTTCGACCTAAGCCGCTACATCAAGTGGCTTAAGCCCAACAACAAAACCAACATAATCAACTCTAATCTCATTGACCCTGTGCCTAATATTGAGAACGACTTCACCCCAAAACCTAATCAAGAAAAAGGGTTGAATTTTTTCCGCAGCCAAGAGCCATTGAGCAATGAAGAAGGGACACTGACACTGACTCAGCCTCGGCCAGCTGCTGCCACGTCAGCCCTAGGGCTGTTGCTTCAGTCTGCCAAGTTTAAGGAGATGATGGAGATGACATCCGCCGCGGATTTGTCGGCACCGCCGCCGGACTCTGAGCTGCCGCCGTGCACGTTTCCCGATGACATTCAAACGTACTTCGAGTGTGAAGATTCCAATAGATATGGAGAAGGGGATGATATCATGTTCAGTGACCTAAACAGGTTTATGCCCCCTATGTTCCATTGTGATGACTTTGAGGCTTGA 1068 0.4719 MGKHQTHKINNGSTNNNLNATNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLATYQNDLKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNKTNIINSNLIDPVPNIENDFTPKPNQEKGLNFFRSQEPLSNEEGTLTLTQPRPAAATSALGLLLQSAKFKEMMEMTSAADLSAPPPDSELPPCTFPDDIQTYFECEDSNRYGEGDDIMFSDLNRFMPPMFHCDDFEA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00577 355 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 SUPERFAMILY DNA-binding domain 45 113 IPR016177 GO:0003677
Cca09g00577 355 Gene3D AP2/ERF domain 46 114 IPR036955 GO:0003700|GO:0006355
Cca09g00577 355 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Cca09g00577 355 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 Pfam AP2 domain 46 104 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 ProSiteProfiles AP2/ERF domain profile. 46 112 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 MobiDBLite consensus disorder prediction 1 45 - -
Cca09g00577 355 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Cca09g00577 355 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 340 - -
Cca09g00577 355 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 2 340 - -
Cca09g00577 355 SMART rav1_2 46 118 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Cca09g00577 355 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00577 Cca-Chr9 15285075 15288370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00577 42 210 AP2-EREBP Transcription Factor Family AT5G57390 72.189 2.71e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca09g00577 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00577 K09285 - gmx:100804555 588.571