Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00576 ATGATGAAGAATTCTCTTGTGTTTGTTGCTACAACCATTTCGAAAAGATTCCACGTTCCTCCTTCTCAAACTCAATTCCGATTCTACTGTTCTCTGCCCTCGAACAAGCTCTTCGTGGGAGGCTTGTCATGGTCCGTGGACGAGAAGTCCCTCAAAGACGCATTCCTTTCCTTCGGAGACGTCACTGAAGTGAGGGTAGTGTACGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCCAAATGTGCTAAGGATGCAATGGATGGAAAGGCACTTTTAGGTAGACCATTGAGGATAAACTATGCTCTTAAGAAGGCTCGTGGTGTACCTGTTGTAGTTCCTTGA 372 0.4435 MMKNSLVFVATTISKRFHVPPSQTQFRFYCSLPSNKLFVGGLSWSVDEKSLKDAFLSFGDVTEVRVVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINYALKKARGVPVVVP 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00576 123 Gene3D - 14 117 IPR012677 -
Cca09g00576 123 SUPERFAMILY RNA-binding domain, RBD 32 116 IPR035979 GO:0003676
Cca09g00576 123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Cca09g00576 123 SMART rrm1_1 36 109 IPR000504 GO:0003723
Cca09g00576 123 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 17 123 - -
Cca09g00576 123 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Cca09g00576 123 PANTHER TRANSFORMER-2-RELATED 17 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00576 Cca-Chr9 15214605 15224228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00576 37 92 C2H2 Transcription Factor Family AT2G19380 44.643 3.08e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00576 - - ccaj:109804718 249.21