Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00573 ATGGCAAGCACCAATTCTAGCGTTCCATCTCACATAAAAGCTTGGGTGTACTCAGAATATAGGAACATAGAAGAGGTTCTCAAGTTTGATCAAAATGTACCTACACCACACATCAAGGAAGCCCAAGTGCTCATGAAGGTTGTGGCTGCTGCCATTAATCCCGTAGATTACAAGAGGGCTCTTGGCCATTTCAAGGACATCGACTCTCCTTTACCCACTGCACCGGGGTATGATGTTGCTGGGGTGGTGGTTAGAGTGGGAAATCAAGTGAAGAAATTTGAAGTTGGAGATGAAGTTTATGGCGATATCAATGAGATTACTTTGGACCATCCAAAGACTATTGGCTCTTTGGCTGAATACACTGCTGTTGAAGAAAAAGTATTGGCTCACAAACCCTCCAATTTGAGTTTTGTGGAAGCTGCTAACCTCCCTTTGGAAATCATAACTACTTATCAAGGACTTGAAGCCGCTGAGTTCTCCGCTGGAAAATCTATTCTTGTTCTTGGAGGTGCTGGTGGAGTTGGCTCACTTGTTATTCAGATCGCCAAGCATGTGTTTGGTGCATCTAAGATAGCAGCTACTGCTAGTACTGGAAAACTAGAATTGTTGAAGAACTTAGGAGCAGACTTGCCTATTGATTACACAAAGGAGAATTTTGAAGAATTGGCAGAGAAGTTTGATGTGGTGTACGATGCTGTAGGGCAAAGTGAGAGGGCATTGAAGGCTGTTAAAGAAGAGGGTAAAGTTGTGACAATATTGCCTCCTAGAACTCCACCAGCCATCCCATTTTTGCTCACTTCAGATGGAGCTTTGTTGGAGAAACTGAGACCTTACTTGGAGAGTGGAAAGGTGAAGCCAATACTGGATCCTAAGAGCCCCTTTCCATTTTAA 891 0.4355 MASTNSSVPSHIKAWVYSEYRNIEEVLKFDQNVPTPHIKEAQVLMKVVAAAINPVDYKRALGHFKDIDSPLPTAPGYDVAGVVVRVGNQVKKFEVGDEVYGDINEITLDHPKTIGSLAEYTAVEEKVLAHKPSNLSFVEAANLPLEIITTYQGLEAAEFSAGKSILVLGGAGGVGSLVIQIAKHVFGASKIAATASTGKLELLKNLGADLPIDYTKENFEELAEKFDVVYDAVGQSERALKAVKEEGKVVTILPPRTPPAIPFLLTSDGALLEKLRPYLESGKVKPILDPKSPFPF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00573 296 Pfam Zinc-binding dehydrogenase 173 252 IPR013149 -
Cca09g00573 296 Gene3D - 19 294 - -
Cca09g00573 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 260 IPR036291 -
Cca09g00573 296 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 296 IPR044626 GO:0016628
Cca09g00573 296 CDD MDR_like_2 13 296 - -
Cca09g00573 296 Pfam Alcohol dehydrogenase GroES-like domain 41 102 IPR013154 -
Cca09g00573 296 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 296 - -
Cca09g00573 296 SUPERFAMILY GroES-like 10 167 IPR011032 -
Cca09g00573 296 SMART PKS_ER_names_mod 22 288 IPR020843 GO:0016491
Cca09g00573 296 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 162 183 IPR002364 GO:0008270|GO:0016491
Cca09g00573 296 Gene3D - 154 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00573 Cca-Chr9 15005679 15006947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00573 40 262 Monolignol Biosynthesis Gene Families AT4G37980 24.111 5.59e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00573 K18980 - gmx:100791274 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00573 09 15005679 15006947 Cca07g02324 07 51794358 51798650 PCT