Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00565 ATGGAACCCAGATTCAGGTTTCtcctcatcctcgttctcctcgtcctcgtactcgttatcgtACCCTTGGAAGTGGAATCCGCGTGCAAGCAGGGTTGTCCAGTGGCACTGGGGTCCTACTACATGTGGAGCGGCTCCAAACTCACCTACATCTCCCAGATCATGCCCTCGGCGCTTCTCACCAAGCCCGAGGACATAGTGGCCTACAACAAGGACACAGTGCCCAACAAGGACAGCGTTCAGGCCTTCATAAGGGTCAACGTTCCCTTCCCCTGCGACTGCGTCGACCAGCAGTTCCTCGCGCACACCTTTCAGTACGACGTTCAGTCGCAGGACACCTACGATTACGTTGCGCGGACCGTCTTTGCTAACCTCACCGACGTTGCGTGGCTGAGGAGGTTCAATAGTTACGCGCCTGATAACATTCCCGACACGGGAACGCTCAATGTCACTGTTAATTGCTCGTGCGGGAACAGCGACGTTGGCGGTTATGGGTTGTTCGTCACGTACCCTCTTAGGCCTGGGGACACCCTTGGCTCTGTGGCTTCTTCTGTTGGGCTTGACTCGGGGTTGCTGCAGAGGTACAATCCTGGGGTCAATTTCAACCAAGGGACTGGACTCGTTTATATTCCTGGAAAAGATCAAAATGGTAGCTATGTGTTTTTGTCGTCCAGTTCAGGAGGTCTTCCTGGTGGGGCTATTGCAGGAATAGCTGTTGGAGTTGTGGCAGGTCTTCTGTTATTGGGAGTTTGTCTCTATGTGGGATATTTCCGGAAGAAGAAGATACGGAAGGTGGAACTTCCACTAGATTCCAGTGCACTCTTTGCTCAAGATGGGAAGGATGAAACCTCTCGTAGTAGTGCAAATGAAACTTCCGGACCTGGTGGTCCTGCTGCCATCACAGGCATAACAGTGGACAAATCGGTGGAGTTCACATATGAGGAGCTGGCAACTGCCACAGATAACTTTAGCTTGGCTAATAAAATTGGTCAAGGTGGTTTTGGGTCTGTCTATTATGCAGAGCTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGACATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTTTTGACACGTGTTCATCATCTTAACCTGGTGCGATTGATCGGATACAGTATTGAGGGTTCTCTTTTCCTTGTCTATGAATACATTGAGAATGGAAACTTAAGTCAACATCTGCGTGGTGCAGGTAGTAGAGAACCTCTGCCATGGGCTACTCGGGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATTCACGAGTATACAGTACCTGTGTATATTCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTCCGGGGGAAGGTTGCTGATTTTGGATTGACCAAACTGACAGAAGTTGGAAGCTCATCACTTCCCACTGGTCGCTTAGTTGGAACATTTGGATACATGCCACCAGAGTATGATAACTTGTTCTTTAAATATAAGAGGGTGCTATTCATATTGAACATTTAA 1524 0.4665 MEPRFRFLLILVLLVLVLVIVPLEVESACKQGCPVALGSYYMWSGSKLTYISQIMPSALLTKPEDIVAYNKDTVPNKDSVQAFIRVNVPFPCDCVDQQFLAHTFQYDVQSQDTYDYVARTVFANLTDVAWLRRFNSYAPDNIPDTGTLNVTVNCSCGNSDVGGYGLFVTYPLRPGDTLGSVASSVGLDSGLLQRYNPGVNFNQGTGLVYIPGKDQNGSYVFLSSSSGGLPGGAIAGIAVGVVAGLLLLGVCLYVGYFRKKKIRKVELPLDSSALFAQDGKDETSRSSANETSGPGGPAAITGITVDKSVEFTYEELATATDNFSLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGAGSREPLPWATRVQIALDSARGLEYIHEYTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYDNLFFKYKRVLFILNI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00565 507 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Cca09g00565 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Cca09g00565 507 Pfam Protein tyrosine and serine/threonine kinase 325 490 IPR001245 GO:0004672|GO:0006468
Cca09g00565 507 MobiDBLite consensus disorder prediction 278 300 - -
Cca09g00565 507 PANTHER LYSM RECEPTOR KINASE 1B 12 491 - -
Cca09g00565 507 SUPERFAMILY Protein kinase-like (PK-like) 305 494 IPR011009 -
Cca09g00565 507 Gene3D Phosphorylase Kinase; domain 1 308 393 - -
Cca09g00565 507 ProSiteProfiles Protein kinase domain profile. 323 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00565 507 MobiDBLite consensus disorder prediction 278 294 - -
Cca09g00565 507 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 491 IPR044812 GO:0019199|GO:0045087
Cca09g00565 507 SMART serkin_6 323 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00565 507 CDD TM_EGFR-like 233 264 - -
Cca09g00565 507 Gene3D Transferase(Phosphotransferase) domain 1 394 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00565 Cca-Chr9 14730479 14741074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00565 5 490 Receptor kinase-like Gene Family AT3G21630 57.229 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca09g00565 PK_Tyr_Ser-Thr 3.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00565 - K13429 gmx:100777781 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00565 09 14730479 14741074 Cca05g01725 05 36825080 36829702 PCT