LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00562	ATGGCTTCTTTGATCCGTCTGCAATTGTTCTCAATTCTTCTGTTCTACAACGTAATTGGCTCCCTTAGCGTTTCACCTACTGACACAGACTCAATTTTCAAGCATTACAACTGCACAAACAAGGCTATTTCGGGTCTCAAAAGCACTTACAAATCCAACTTAAAGAAACTCTTGTCTACACTTGCATCCAAAGCTTGTGACAACACCACCTATCACAGCTTCTACCACGCCAAAGTTAGTGGAACAAACAAACGTGACATAATCTATGGCCTCTTCATGTGCAATGGATACATAGAGAAATTAAAATGTGGGAAATGTGTGAAGGAATCCATCGAGACACTTAAATCAAAGTGTGTCAACAGAAATGAAAAAAAGGGCGTAATTTGGACTCATGAATGCATGGTTCGTTACTCAAACCGGTTTTTCTTCAACACTAAGGAGGAACGGCCATCGTTTTGTGAGAAGAAAAGTGAAGATTATGAAGGCCAATTGGATGGTTTCAACAAGGTCCTGAGTTCCTTGACGGAGGATCTTCTAACTAAAATAAGTAAAGCTCCAAATGGTTCTAATAAATTTTCTGTAAACAAAGTAACTATATCTGAGGACAAACACCTGTTTGGATTTGCTCAGTGCATCCCGAACCTCTCCATGGACAATTGCAAGAAGTGCCTCAGGCAAGCCATGGATTTTCTTCAAACATGTGCTAGAGGCAAGATTGGAGGAAGAGTTCTATATCCTAGTTGTATTCTTAGATATGATCCTAATCTATTTTTTCCTCTTCCTACAGGAAAAAGAAAGAATCCTGGAGCACTTGCATCAATCATATGTTTTCATGGAATTCTTCCAGTTGTGATTTTAGTTTTTGGTTGCTATCTGCTACATAGGGAGTCAAGGAAGAATCTCAAGCATCAAAAGGGAAATTGTGGGGAAGAGATTACTACAGAAATGAACTCTTTGCAATTTGATTTGAATACTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACATGATAGGGGAAGGTGGTTTTGGAGCAGTTTACAAGGGTATGTTTCGTAATGGACTTGAAATAGCCGTAAAGAGGCTCAAAAGAAATTCCAGTCAAGGGGCTATAGAATTCAAGAAAGAGGTTTTGTTGATTTCCAAACTTCAACACAGAAATCTTGTGAGACTAATAGGATTTTGCATTGAAAGGAATGAGAAGATACTCATTTATGAATTTGTGCACAACAAGAGCCTAGATTATTACTTATTCTGCTCTAAAAGTCAGAGAAAATTAAGTTGGACTGAACGATACAATATTATAAGAGGAATCGCACGAGGAATTCTTTATCTCCACGAGGATTCTCATCTCAACATTATACACTGCGATCTTAAACCCAACAACATTTTATTAGACAGAAAAATGAATGCAAAGATATCTGACTTCGGGTTGGCAAGGATTATGTCCGTTGATCAAATGCAGGGGAATACTAGTATAATTTCTGGGACATATGGTTATATGTCTCCGGAATATGCAATGCTTGGTCAATTTTCTGTGAAGTCTGATGTATTCAGCTTTGGAGTCATAATTCTTGAGATCATTAGTGGAAAAAGGAATGTTGATTGTACTGGGAAAGATTCTGATGACCTCTTGAGCTATGCTTGGAAGAAGTGGAAGGAAAGTAAACACATTGAATTGTTGGATCCCACATTAGAAGACTCGTTTTCTGAAACAGAAATCACTAGGTGCATACAGATTGGACTACTATGTGTGCAAGGACACCCAGATCAGAGGCCTATCATGGCAACAATTGCTTTGTATTTTAACTGTAATTCAGTTGATCTGCCTTTACCTCAAGAGCCAGCCTTTTTAATGCGTGGAAAAACGGAAATCAAGGATGAATGA	1890	0.3804	MASLIRLQLFSILLFYNVIGSLSVSPTDTDSIFKHYNCTNKAISGLKSTYKSNLKKLLSTLASKACDNTTYHSFYHAKVSGTNKRDIIYGLFMCNGYIEKLKCGKCVKESIETLKSKCVNRNEKKGVIWTHECMVRYSNRFFFNTKEERPSFCEKKSEDYEGQLDGFNKVLSSLTEDLLTKISKAPNGSNKFSVNKVTISEDKHLFGFAQCIPNLSMDNCKKCLRQAMDFLQTCARGKIGGRVLYPSCILRYDPNLFFPLPTGKRKNPGALASIICFHGILPVVILVFGCYLLHRESRKNLKHQKGNCGEEITTEMNSLQFDLNTIQEATNKFSDDNMIGEGGFGAVYKGMFRNGLEIAVKRLKRNSSQGAIEFKKEVLLISKLQHRNLVRLIGFCIERNEKILIYEFVHNKSLDYYLFCSKSQRKLSWTERYNIIRGIARGILYLHEDSHLNIIHCDLKPNNILLDRKMNAKISDFGLARIMSVDQMQGNTSIISGTYGYMSPEYAMLGQFSVKSDVFSFGVIILEIISGKRNVDCTGKDSDDLLSYAWKKWKESKHIELLDPTLEDSFSETEITRCIQIGLLCVQGHPDQRPIMATIALYFNCNSVDLPLPQEPAFLMRGKTEIKDE	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00562	629	SMART	serkin_6	333	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca09g00562	629	CDD	STKc_IRAK	339	600	-	-
	Cca09g00562	629	Pfam	Protein tyrosine and serine/threonine kinase	337	600	IPR001245	GO:0004672\|GO:0006468
	Cca09g00562	629	SUPERFAMILY	Protein kinase-like (PK-like)	318	619	IPR011009	-
	Cca09g00562	629	Gene3D	-	30	142	IPR038408	-
	Cca09g00562	629	Gene3D	-	151	257	IPR038408	-
	Cca09g00562	629	ProSiteProfiles	Protein kinase domain profile.	333	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca09g00562	629	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	274	622	-	-
	Cca09g00562	629	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	25	258	-	-
	Cca09g00562	629	ProSitePatterns	Protein kinases ATP-binding region signature.	339	361	IPR017441	GO:0005524
	Cca09g00562	629	Pfam	Salt stress response/antifungal	45	139	IPR002902	-
	Cca09g00562	629	Pfam	Salt stress response/antifungal	153	253	IPR002902	-
	Cca09g00562	629	ProSiteProfiles	Gnk2-homologous domain profile.	148	257	IPR002902	-
	Cca09g00562	629	ProSiteProfiles	Gnk2-homologous domain profile.	32	142	IPR002902	-
	Cca09g00562	629	Gene3D	Phosphorylase Kinase; domain 1	294	408	-	-
	Cca09g00562	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	454	466	IPR008271	GO:0004672\|GO:0006468
	Cca09g00562	629	Gene3D	Transferase(Phosphotransferase) domain 1	409	608	-	-
	Cca09g00562	629	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	25	258	-	-
	Cca09g00562	629	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	274	622	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00562	Cca-Chr9	14624033	14626931	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00562	7	628	Receptor kinase-like Gene Family	AT4G05200	41.448	8.93e-170	498

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Cca09g00562		PK_Tyr_Ser-Thr	2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00562	-		-	mtr:MTR_3g079850	757.673