Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00558 ATGGACGACGACACCTACTGTGTTGCGTTTCCGAACAAATATGCCACCTTGCATGCTTCAGAAACTCCGTTTCGCGACGAAGACCAACGCTTCATGGTGGAGTTCAAGTACTCGAAGGAGTACATTTTGAGCGCTAGGAAATTCCAGATCCGTTCCTACAAGACGTACCACACGTTTCCGAATGTAACAAAGGACGAAGTGATGCAAGAGGCGACCATCGTGCCTTGGCTCGTGAGCATGGGCGTGCCCGACGACGCTCACGGCTTCGTGGTGGATAAAATAGCGGAATGCGCGCGCGACATGCTTCGTGGGGGCTACGTGAGGGACAAAGTTCTGCCCATGCAAGTTGTTCTTGTTATCACGAGGGCCAGTGAAGACGAAATGAGTGATGAAGAAGACTCTCCCGAGATTgaagaggaagaggaagaggaagaggaagaAgaggaagatgatgatgatgatgatCTTGGGTTGGTGCCTGCGTCTAAGTCACTTGTTGAGGGTTTGGAGATGTTTCAAGGAAAAGGGTCTAAGAAAGAAAGGTGTGCGATTTGTTTCGAGGATTTTGAGGTTGGTGTTCACATGCCGTGTTTGCACGTTTTTCATGAAGAATGCATCACTGATTGGTTTAGGTTGTTCGCTGTATAA 648 0.4506 MDDDTYCVAFPNKYATLHASETPFRDEDQRFMVEFKYSKEYILSARKFQIRSYKTYHTFPNVTKDEVMQEATIVPWLVSMGVPDDAHGFVVDKIAECARDMLRGGYVRDKVLPMQVVLVITRASEDEMSDEEDSPEIEEEEEEEEEEEEDDDDDDLGLVPASKSLVEGLEMFQGKGSKKERCAICFEDFEVGVHMPCLHVFHEECITDWFRLFAV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00558 215 PANTHER F6A14.12 PROTEIN-RELATED 73 211 - -
Cca09g00558 215 MobiDBLite consensus disorder prediction 123 159 - -
Cca09g00558 215 Pfam Ring finger domain 181 211 IPR001841 -
Cca09g00558 215 MobiDBLite consensus disorder prediction 126 156 - -
Cca09g00558 215 ProSiteProfiles Zinc finger RING-type profile. 182 209 IPR001841 -
Cca09g00558 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 211 - -
Cca09g00558 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 212 IPR013083 -
Cca09g00558 215 SUPERFAMILY RING/U-box 181 212 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00558 154 210 C3H Transcription Factor Family AT1G18760 37.097 3.19e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00558 - - lang:109344708 152.91