Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00553 ATGAAGAAGCTTTCTCTTTATGCTTGTTTACTCAAATTGAGTCTCTTGGTTCTTCTTCCCTACAGCAAAGCCAATCAGGCTGATAAACTAGATGAGTTGATTCTGTCTAGGAGCTCAAAGAATCCTCCTCTGACTCTTTCATGGGCAGAGGAAGAAGCATTGAAAACTCATTCTTCTGCTTATGTTGCACCACAAGAGGGGCTGAGCCAAGCTGACAAGATTCTCACATTGCCTGGCCAGCCTTATGGAGTGAATTTTGATCAATATTCAGGTTATGTCACTGTTGATCCAGTGGCTGGAAGAGAACTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCAACTAAACCTTTAGTATTGTGGCTAAATGGAGGACCCGGTTGTTCCTCGTTGGGTTATGGTGCCTTTGAGGAATTGGGACCTTTTAGAATAAACTCTGATGGGAAAACACTTTATCTTAACAAATATGCTTGGAATGAAGTGGCAAATGTGCTGTTCTTGGAATCCCCTGCTGGAGTGGGCTTTTCCTACTCAAACACTACATCTGATTATGAAAAAGCAGGAGATAAGTCAACTGCTAAAGATTCCTATGTTTTCCTCATCAATTGGTTAGAGAGGTTTCCACAGTACAAAACCCATGATTTTTACATCACTGGAGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATACACTATTTTGGTGAACAATAAATTCAGTCACCAAAGTATTAACCTCAAAGGCATTGCTATAGGGAATGCTTGGATTGATGATGCGACAGGTTCAAAGGGAATATTTGATTACTTATGGACTCATGCTTTGAACTCAGATCAAACCCACGAGTTGATTGAGAAGTACTGCGATTTTACATCTGAAACCATTTCGGAAATATGTTCCAATGCCACAACAAGGGCATTAGTTGAGAAAGGAAAAATAGACTTCTATAACATCTATGCTCCACGGTGTCACGACCCTTCTCTCAAAAATGGATCAACTGGTTCTGTATATGATTTTGACCCGTGTTCTGATTACTACGGCGAAGCCTATTTTAATAGGCCAGAGGTCCAACTAGCTCTTCATGCAAAACCCACAAACTGGACCCACTGCAGTGAATTATTGGACTGGAACGACAGCCCTACTACCATTCTACCTGTCATCAAGTATCTCATCGACAGTAACATTGGATTGTGGATATACAGTGGTGATACTGATGCAAGGGTGCCAGTCACATCTTCAAGATACGCAATCAACACCCTCAAGCTCCCTATCCAGGTTCCTTGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATACGTAGTGAAATACAAAGGAATAACATTTGTGACAGTGAGAGGAGCAGGGCATGTGGTTCCTAGCTGGCAACCAGCACGGGCTCTAACCATGATCGTTTCATTCCTCTATGGAAGCCTGCCACCTGCTTCACCATGGAATGGGTTCTAA 1470 0.4245 MKKLSLYACLLKLSLLVLLPYSKANQADKLDELILSRSSKNPPLTLSWAEEEALKTHSSAYVAPQEGLSQADKILTLPGQPYGVNFDQYSGYVTVDPVAGRELFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYLNKYAWNEVANVLFLESPAGVGFSYSNTTSDYEKAGDKSTAKDSYVFLINWLERFPQYKTHDFYITGESYAGHYVPQLAYTILVNNKFSHQSINLKGIAIGNAWIDDATGSKGIFDYLWTHALNSDQTHELIEKYCDFTSETISEICSNATTRALVEKGKIDFYNIYAPRCHDPSLKNGSTGSVYDFDPCSDYYGEAYFNRPEVQLALHAKPTNWTHCSELLDWNDSPTTILPVIKYLIDSNIGLWIYSGDTDARVPVTSSRYAINTLKLPIQVPWRPWYSGNEVGGYVVKYKGITFVTVRGAGHVVPSWQPARALTMIVSFLYGSLPPASPWNGF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00553 489 ProSitePatterns Serine carboxypeptidases, histidine active site. 448 465 IPR033124 GO:0004185
Cca09g00553 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 483 IPR001563 GO:0004185|GO:0006508
Cca09g00553 489 Gene3D alpha/beta hydrolase 69 326 IPR029058 -
Cca09g00553 489 Gene3D - 343 375 - -
Cca09g00553 489 SUPERFAMILY alpha/beta-Hydrolases 75 478 IPR029058 -
Cca09g00553 489 Pfam Serine carboxypeptidase 78 476 IPR001563 GO:0004185|GO:0006508
Cca09g00553 489 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Cca09g00553 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Cca09g00553 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Cca09g00553 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Cca09g00553 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 448 461 IPR001563 GO:0004185|GO:0006508
Cca09g00553 489 PANTHER CARBOXYPEPTIDASE 18 483 - -
Cca09g00553 489 Gene3D - 384 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00553 Cca-Chr9 14225430 14231005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00553 340 479 Calmodulin-binding Proteins AT2G22960 29.530 3.92e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00553 K16297 - gmx:100779407 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00553 09 14225430 14231005 Cca09g00553 09 14225430 14231005 ECH
Cca07g00845 07 14279216 14279559 Cca09g00553 09 14225430 14231005 ECH