Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00533 ATGGGAAGACAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATCAATTTCATCCTCAATAATGGTATTCACTGCTGGAGAACAGTTCCCAAGCTAGCAGGCTTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTTACTGAAAAGGAAGAGGATCAAATTATACAACTACATTCATGTCTAGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGTTGAAGTTCCTTGGTGTGGACCCTATGACACTGAAGCCAATTGAGCAAAAGGAACAATCTGGTGATGACAAAAACATGACAGACCAACAGCAAAAAAACACTTCAAAAGGGTCTGAGCAAGGTGTGGAGAACATGTCCTTGGACATGACAAAAACAGAAGGGAAAATGGAAGAGAACAAGGTGATGACTTGGGATGATACCACAGATTTTTCAAACTATGAGATGTTATGCTCACAATTGGACTTGGGATCATGGATGAGCCAAGAAACCAAAACCAGCACTACTAGTTCTTACTGTAGTTCCTCTTTCTCATTGGATGATTCTAGCAACCTTTCTATGGATGAATCCTCTTACCTTCAGGAAAATTCCTTACAACAATGGGTTGATGGCTTCGATTCAATTCTACCATGGGATAGCTTCAACCCTCTTGAGAAAGATTTTCTCTTTTTGGATAATAGGCAATAA 810 0.4049 MGRQPCCDKVGLKRGPWTIEEDHKLINFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEKEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKFLGVDPMTLKPIEQKEQSGDDKNMTDQQQKNTSKGSEQGVENMSLDMTKTEGKMEENKVMTWDDTTDFSNYEMLCSQLDLGSWMSQETKTSTTSSYCSSSFSLDDSSNLSMDESSYLQENSLQQWVDGFDSILPWDSFNPLEKDFLFLDNRQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00533 269 Gene3D - 11 67 - -
Cca09g00533 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca09g00533 269 SMART sant 13 63 IPR001005 -
Cca09g00533 269 SMART sant 66 114 IPR001005 -
Cca09g00533 269 MobiDBLite consensus disorder prediction 141 160 - -
Cca09g00533 269 PANTHER MYB DOMAIN PROTEIN 40 2 245 - -
Cca09g00533 269 CDD SANT 16 61 IPR001005 -
Cca09g00533 269 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca09g00533 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca09g00533 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca09g00533 269 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 245 - -
Cca09g00533 269 CDD SANT 70 110 IPR001005 -
Cca09g00533 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca09g00533 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca09g00533 269 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca09g00533 269 MobiDBLite consensus disorder prediction 129 160 - -
Cca09g00533 269 Gene3D - 68 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00533 Cca-Chr9 13456318 13457720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00533 1 169 MYB Transcription Factor Family AT5G16600 61.878 2.27e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00533 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00533 K09422 - gmx:100819471 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00533 09 13456318 13457720 Cca09g00533 09 13456318 13457720 ECH