Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00528 ATGGTTTCTTGGAACTCATTTCCTTTAGAAGTGATCTACCAAGTGTTTGGTTGGTTAGCTTTCCTTTCATGGTCTGTTGCTGGCTACCCACAAATCATCTTGAATTTTCGTAGGAAAAGTGTGGTGGGCTTAAGCTTGGATTTTGAGATTCTCAACTTCACCAAACACTGGTCATATCTCATATACAATGCTTCCCTCTTCTTTAGTCCTGTTATTCAAAAGCAGTATTTTCAAAAGTATGGTTATGGACAGATGATTCCTGTAGCTGCTAATGATGTTGCTTTCTCCACTCATGCAGTCATAGTAAATTTAATTATATTGTTCCAAATTGTAATGTTTGAACGTGGAAGTCAAAAGTTCTCCAACTATGCTATTGCAATAGTTGTTGTTGTGTGGTTTAGTGCTGCTGTTTGTTTTTTCATAGCATTGCCCACTCAATCTTGGCTTTGGTTAATCTCCATTTTCAATTTAATTCAAGTAGTTATGACCTTCATCAAATATTTTCCCCAGGCATTCATGAACTTCTTGAGAAAGAGCACAGATGGATTTAGCATTGGCAGTATTCTCCTTGATTTTTCTGGAGGGGTCTTAAATTATTCACAAATGGCCGTTCAATCCATAGATCAAGGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTACTTATATCCTTGGTATCTATATTCTATGATTCTATTTTTATGTGTCAACATTATGTATTATACCGTGACAAGAAAGGACTTGCTTTTAAAAGTCCCGAAGAAGTCGATCAACCACTAATCTATTCAAGTCCAATAGATCAACAAATCAAAGATTCTGTTAAATCTTCACATCAGTCTCCAGCTGAACTTCCAGGAATCAAATTTGAACTTTGTGGCTGTGCTTTTAGACGATGGAAAAGGATGGAATCAATGTTGCTAACTCGGGATTCTACCTGGGATCAAGAGGGGGTGAAAACTCGTAACATATGGATCATAACTCAGATTAACACAGGTCGATGGAGGGAGAGTCAGACTCAGAACCCCAATGATTCCTCTCTCACAGACACTAACAAGGTCATTGACACCGAGAATGAATGTACAGGTCCAAATATATGTCCTGCCAACCATAGTTGCATTGAAATTAATGATGAATGCCGGACATCAAATACTTTCCTTGATGACAAATTTCACACTAATGTCGGTAGTGCACAGTTGTGTGAAAAGCCCCATGCTACCTCTGTTGATATATCAATGAATGGTACTGATGTAAAAAATGAGGAGGAAATATTTGTGGCACCAACGATTGGCATGGAGTTTGAATCAGAAGACAATGCTTACAAATGTTATAGCAAGTATGCTGTCCTGAAAGGTTTTAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTGGTGTCCAGAAGATACACCTGCTACAGACAGGGTTATCGTCCTAACAAAAATGGTACACACTTGAGGAAATTGCAGCAGGAAACAAGAACTGGTTGTTTGGCACACATGACTATTGCTCGTCAGCCAAATGGCAAGTTTCGAGTCACTCATTTTGAAACTGAGCACAATCATGAGTTTGTAACACCCTGTACTGCACATATGTTACCATCACAGAAAAGATTGAGTTTTGCTCAAGCTGTTGCAGCAAACCTAATAGAGTCCAGgtcatga 1677 0.384 MVSWNSFPLEVIYQVFGWLAFLSWSVAGYPQIILNFRRKSVVGLSLDFEILNFTKHWSYLIYNASLFFSPVIQKQYFQKYGYGQMIPVAANDVAFSTHAVIVNLIILFQIVMFERGSQKFSNYAIAIVVVVWFSAAVCFFIALPTQSWLWLISIFNLIQVVMTFIKYFPQAFMNFLRKSTDGFSIGSILLDFSGGVLNYSQMAVQSIDQGSWVNFYGNIGKVLISLVSIFYDSIFMCQHYVLYRDKKGLAFKSPEEVDQPLIYSSPIDQQIKDSVKSSHQSPAELPGIKFELCGCAFRRWKRMESMLLTRDSTWDQEGVKTRNIWIITQINTGRWRESQTQNPNDSSLTDTNKVIDTENECTGPNICPANHSCIEINDECRTSNTFLDDKFHTNVGSAQLCEKPHATSVDISMNGTDVKNEEEIFVAPTIGMEFESEDNAYKCYSKYAVLKGFSIRKDFVNKSRINGAVVSRRYTCYRQGYRPNKNGTHLRKLQQETRTGCLAHMTIARQPNGKFRVTHFETEHNHEFVTPCTAHMLPSQKRLSFAQAVAANLIESRS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00528 558 Gene3D - 12 146 - -
Cca09g00528 558 Pfam PQ loop repeat 13 70 IPR006603 -
Cca09g00528 558 Pfam PQ loop repeat 152 207 IPR006603 -
Cca09g00528 558 PANTHER CYSTINOSIN-LIKE PROTEIN 1 278 - -
Cca09g00528 558 TIGRFAM 2A43: lysosomal Cystine Transporter 11 243 IPR005282 -
Cca09g00528 558 SMART ctns 26 57 IPR006603 -
Cca09g00528 558 SMART ctns 165 196 IPR006603 -
Cca09g00528 558 PANTHER CYSTINOSIN 1 278 IPR005282 -
Cca09g00528 558 Pfam FAR1 DNA-binding domain 444 529 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00528 Cca-Chr9 13383177 13400595 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca09g00528 FAR1 3.8e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00528 K12386 - gmx:100794945 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00528 09 13383177 13400595 Cca09g00528 09 13383177 13400595 ECH