Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00517 ATGCTCTCTACAGTCGAAAAGTACCAGCTCAGGCGCTTCCTCGGCCGCGGGAACTTCGCCAAGGTCTACCAGGCGCACTCGCTGCTCGACGGTGCCACGGTCGCGGTAAAAGCCATCGAAAAGTCCAAGACGGTCGATGCCACCATGGAGCCCCGCATCGTGCGCGAGATTGACGCCATGCGTCGCCTCCAGCACCACCCTAACATCCTCAAAATCCACGAAGTCCTTGCCACCAAGACCAAGATCTACCTCATCATGGACTTCGCCGGCGGCGGCGAGCTCTTCTCCAAGCTTTCCCGTCGCGGCCGCCTCCCGGAGTCCCTCGAGCGCCGCTACTTCGCGCAGCTCGTCTCCGCGCTTCGCTTCTGCCACCGCCACAGTTATAAGTTGGGGATGAACGCTTTTGACATAATCTCCATGTCCTCGGGGTTGGACTTGCGGGGGCTGTTCGAAACGACGTCGGATAAGGGAGAAACGTGCGATTGGGTTGGGAGAAACGGTTCACTTCTGATAACGGAGAGATTCGATAATTTTGGAAAACGAGGTGTTGGTGTGTGCACTGAGGTGGAAATAAGAATACTGAATTGTGAACAGCATGCTTTCAAGCCTGCGTGTAATGTCTTGATCACGTTTAATGATGGGAAGAACCGTAAGCAGGTTCCATTTAAAAAAGAAAATGGTCAAATGGTTACAATCCCACTTTTCCAAAGTCAAGAAAACATTGCTGGGAAGATTACAATAGAACCAATGCAAGGGAAAAAAATTGATCACAATGGTGTTGAGCTCCTTGGGCAGATAGAGATGTATTTTGACAGAGGAAATTTTTATGACTTTACTTCCCTTGGTAATTGA 852 0.5082 MLSTVEKYQLRRFLGRGNFAKVYQAHSLLDGATVAVKAIEKSKTVDATMEPRIVREIDAMRRLQHHPNILKIHEVLATKTKIYLIMDFAGGGELFSKLSRRGRLPESLERRYFAQLVSALRFCHRHSYKLGMNAFDIISMSSGLDLRGLFETTSDKGETCDWVGRNGSLLITERFDNFGKRGVGVCTEVEIRILNCEQHAFKPACNVLITFNDGKNRKQVPFKKENGQMVTIPLFQSQENIAGKITIEPMQGKKIDHNGVELLGQIEMYFDRGNFYDFTSLGN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00517 283 Gene3D - 193 283 IPR014752 -
Cca09g00517 283 Gene3D Transferase(Phosphotransferase) domain 1 2 129 - -
Cca09g00517 283 PANTHER SERINE/THREONINE KINASE 4 126 - -
Cca09g00517 283 ProSiteProfiles Protein kinase domain profile. 8 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00517 283 SUPERFAMILY Protein kinase-like (PK-like) 5 127 IPR011009 -
Cca09g00517 283 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 126 - -
Cca09g00517 283 Pfam Vacuolar protein sorting-associated protein 26 201 281 IPR028934 GO:0006886
Cca09g00517 283 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Cca09g00517 283 Pfam NAF domain 132 153 IPR004041 GO:0007165
Cca09g00517 283 ProSiteProfiles NAF domain profile. 127 151 IPR018451 GO:0007165
Cca09g00517 283 Gene3D Kinase associated domain 1, KA1 130 188 - -
Cca09g00517 283 Pfam Protein kinase domain 8 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00517 Cca-Chr9 12969979 12972423 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00517 7 125 Miscellaneous Gene Families AT3G23000 69.748 5.55e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca09g00517 Pkinase 5.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00517 K12761 - ccaj:109819256 313.538