Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00515 ATGGCTACACTTTCATGCTTCCTTATTCTTTTTGCTTTTTCTCTTCTGACACCCCATTTTGTTTCTTCCTCAGCAGTTCGAGACCCTGAATTGGTTGTGCAAGAGGTACAAAGAAGCATCAATGCCTCTAGGAGGAACTTGGGTTATTTATCATGTGGAACAGGCAACCCCATTGACGATTGCTGGCGCTGTGACCCTAATTGGGAGAACAACCGTCAAAGGCTAGCCGACTGCGCCATAGGGTTCGGCAAGGACGCCATCGGAGGGAAGCACGGTCGAATTTACGTCGTCACCGATTCTGGTGACGACGATGCTGTAAACCCTAAACCCGGAACCCTAAGATACGGAGCCATACAAGACGAGCCACTTTGGATAATCTTCAAGAGGGACATGGTGATAACCCTAAAAGAAGAGCTTCTAGTGAACTCCTTCAAGACAATAGATGGAAGGGGTGCAAGTGTCCACATTGCTGGTGGGGGATGCATCACCATACACTATGTGAGCAACATCATCGTGCATGGCATCCACATTCATGATTGCAAGCCCACGGGGAACACCAACATTAGAGACTCGCCACATCACTCGGGGTTTTGGACTGTTTCCGATGGTGATGGTGTGTCCATCTTTAATTCCAAGCATGTGTGGGTTGATCATTGCTCCTTGTCTAATTGTCGTGATGGGCTCATTGATGCCATACATGGATCCACGGCTATCACCATATCTAATAACTACATGACCCATCATGACAAGGTTATGCTTTTGGGACACAGTGATTCGTACACACAAGATAAGGACATGCAGGTCACTATTGCCTTCAATCATTTTGGAGAAGGGCTTGTACAAAGAATGCCCAGGTGTAGACATGGCTATTTCCATGTTGTGAACAACGACTACACACACTGGGAAATGTATGCAATTGGTGGGAGTGCCAACCCTACCATCAACAGCCAAGGGAACAGGTTCCTTGCACCTAACAACAGGTTCAGCAAGGAGGTGACCAAGCATGAGGATGCTCCACAGAGTGAGTGGATAGGGTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCAGCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGATCCATGACCACCACTGCTGGTGCACTTACATGTAGAAAGGGCACTCGTTGCTGA 1215 0.4782 MATLSCFLILFAFSLLTPHFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKHGRIYVVTDSGDDDAVNPKPGTLRYGAIQDEPLWIIFKRDMVITLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIVHGIHIHDCKPTGNTNIRDSPHHSGFWTVSDGDGVSIFNSKHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNNRFSKEVTKHEDAPQSEWIGWNWRSEGDMFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTTTAGALTCRKGTRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00515 404 SUPERFAMILY Pectin lyase-like 39 399 IPR011050 -
Cca09g00515 404 PANTHER PECTATE LYASE 18-RELATED 4 401 IPR045032 GO:0030570
Cca09g00515 404 Gene3D - 55 397 IPR012334 -
Cca09g00515 404 Pfam Pectate lyase 137 321 IPR002022 -
Cca09g00515 404 PANTHER PECTATE LYASE 4 401 - -
Cca09g00515 404 SMART amb_all 130 327 IPR002022 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Cca09g00515 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00515 Cca-Chr9 12934904 12937945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00515 7 404 Polysaccharide Lyase AT5G63180 75.373 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00515 K01728 - gmx:100794814 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00515 09 12934904 12937945 Cca09g00515 09 12934904 12937945 ECH