Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00513 ATGCTCTCTACAGTCGAAAAGTACCAGCTCAGGCGCTTCCTCGGCCGCGGGAACTTCGCCAAGGTCTACCAGGCGCACTCGCTGCTCGACGGTGCCACGGTCGCGGTAAAAGCCATCGAAAAGTCCAAGACGGTCGATGCCACCATGGAGCCCCGCATCGTGCGCGAGATTGACGCCATGCGTCGCCTCCAGCACCACCCTAACATCCTCAAAATCCACGAAGTCCTTGCCACCAAGACCAAGATCTACCTCATCATGGACTTCGCCGGCGGCGGCGAGCTCTTCTCCAAGCTTTCCCGTCGCGGCCGCCTCCCGGAGTCCCTCGAGCGCCGCTACTTCGCGCAGCTCGTCTCCGCGCTTCGCTTCTGCCACCGCCACAGTTATAAGTTGGGGATGAACGCTTTTGACATAATCTCCATGTCCTCGGGGTTGGACTTGCGGGGGCTGTTCGAAACGACGTCGGATAAGGGAGAAACGTGCGATTGGGTTGGGAGAAACGGTTCACTTCTGATAACGGAGAGATTCGATAATTTTGGAAAACGAGGTGTTGGTGTGTGCACTGAGGTGGAAATAAGAATACTGAATTGTGAACAGCATGCTTTCAAGCCTGCGTGTAATGTCTTGATCACGTTTAATGATGGGAAGAACCGTAAGCAGGTTCCATTTAAAAAAGAAAATGGTCAAATGGTTACAATCCCACTTTTCCAAAGTCAAGAAAACATTGCTGGGAAGACTGAGAAGTTATAG 747 0.5301 MLSTVEKYQLRRFLGRGNFAKVYQAHSLLDGATVAVKAIEKSKTVDATMEPRIVREIDAMRRLQHHPNILKIHEVLATKTKIYLIMDFAGGGELFSKLSRRGRLPESLERRYFAQLVSALRFCHRHSYKLGMNAFDIISMSSGLDLRGLFETTSDKGETCDWVGRNGSLLITERFDNFGKRGVGVCTEVEIRILNCEQHAFKPACNVLITFNDGKNRKQVPFKKENGQMVTIPLFQSQENIAGKTEKL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00513 248 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 126 - -
Cca09g00513 248 ProSiteProfiles Protein kinase domain profile. 8 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00513 248 SUPERFAMILY Protein kinase-like (PK-like) 5 127 IPR011009 -
Cca09g00513 248 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Cca09g00513 248 Gene3D Transferase(Phosphotransferase) domain 1 2 129 - -
Cca09g00513 248 ProSiteProfiles NAF domain profile. 127 151 IPR018451 GO:0007165
Cca09g00513 248 Gene3D Kinase associated domain 1, KA1 130 190 - -
Cca09g00513 248 Gene3D - 193 246 IPR014752 -
Cca09g00513 248 PANTHER SERINE/THREONINE KINASE 4 126 - -
Cca09g00513 248 Pfam NAF domain 132 153 IPR004041 GO:0007165
Cca09g00513 248 Pfam Protein kinase domain 8 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00513 Cca-Chr9 12888678 12891482 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00513 7 125 Miscellaneous Gene Families AT3G23000 69.748 2.37e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca09g00513 Pkinase 4.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00513 K12761 - ccaj:109819256 313.538