Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00479 ATGTGGGGTTACGGAGATGCGGGGAAATCGTATATCAAATGGTGTGCGCAAATGGCTGTAGCACAAAATATCGGTGTCCCATGGATCATGTGTCAACAACACGATGCTCCCCAGCCTATGATCAATACTTGCAACGGCTACTACTGTGACAATTTTCAGCCCAATAACCCCAAGAGTCCCAAAATGTTCACTGAAAATTGGATTGGATGGTTCCAAAAGTGGGGTGAGAGGGTCCCCCACAGAAGTGCAGAAGATTCAGCTTTCTCCGTTGCACGCTTCTTCCAAAATGGCGGTGTACTCAATAACTACTACATGTACCATGGAGGAACCAACTTTGGTCGCACAGCAGGAGGCCCCTATATACTACATGTACCATGCTTCGATCTGCATTTCGCATTCTCCTCTGTTTCTTCTCCCTTCTGTCAGGAAATGGGTCGTGGAAAAGTAACTTTCAAACGCATCTCAAATGAGAGGTCTCGCAAGACAACTTTCATTCAGAGAAAAAAAGGGTTAACTAAAAAAATCTCTGAATTTTGCACAATATGTGGAGTTGAAGCATGCTTGATTTTGCATGCTGATGGCAATGGTGATACTGGACTAACAACTTGGCCTCAAGACTCCACAGTGGTACACTCCATCATTCAAAAGTATGAGCAATCAAAGAATGAGGGATCTCAAGAGACCTTTGAAATTCAAGATTTTTTTGAGAATAGGAAAAAGATGGTTGAAGCTGAGATTTCCAAAGTGCGGAAAGAGATCACTGACATCAAGTATCCAACTTGGAATCCATGTATCATAAACATGGAAGAGGAGCATTTGAGGGCCTTCCTTGCTCATGTGGATGCTAAGATTGGAGTTTGTGAGCAAAGAATTAACATGATAAAAAACAAGCATCAAAGTGAAGCCAATTCTGATTTCATGCAAAACATGGCTCACTTTCATCCAAACCAAATCATCCCTACTCCTGTGGAGCCAGTTAGTGAAAATAATATGAGTGTGAAATTTACAAATTCATCAAATCAATTTGGTTGTGTTAGTAATCATGGAATTAACATGCAACAAGGTGATGCTTTTCATGGTGGTGATTCTGTGATTTGGGCTAATGAACTGGCTGATTTTGAAAAGTGGTTCAATGAACTTGATGATTGTTCCAATCAACAAGATGATAGGGCCACTCAATTTGAAGAATCGTTCTGA 1197 0.411 MWGYGDAGKSYIKWCAQMAVAQNIGVPWIMCQQHDAPQPMINTCNGYYCDNFQPNNPKSPKMFTENWIGWFQKWGERVPHRSAEDSAFSVARFFQNGGVLNNYYMYHGGTNFGRTAGGPYILHVPCFDLHFAFSSVSSPFCQEMGRGKVTFKRISNERSRKTTFIQRKKGLTKKISEFCTICGVEACLILHADGNGDTGLTTWPQDSTVVHSIIQKYEQSKNEGSQETFEIQDFFENRKKMVEAEISKVRKEITDIKYPTWNPCIINMEEEHLRAFLAHVDAKIGVCEQRINMIKNKHQSEANSDFMQNMAHFHPNQIIPTPVEPVSENNMSVKFTNSSNQFGCVSNHGINMQQGDAFHGGDSVIWANELADFEKWFNELDDCSNQQDDRATQFEESF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00479 398 PRINTS MADS domain signature 166 181 IPR002100 GO:0003677|GO:0046983
Cca09g00479 398 PRINTS MADS domain signature 146 166 IPR002100 GO:0003677|GO:0046983
Cca09g00479 398 CDD MADS 145 189 - -
Cca09g00479 398 ProSiteProfiles MADS-box domain profile. 144 190 IPR002100 GO:0003677|GO:0046983
Cca09g00479 398 SUPERFAMILY (Trans)glycosidases 7 124 IPR017853 -
Cca09g00479 398 Gene3D - 156 243 IPR036879 GO:0003677|GO:0046983
Cca09g00479 398 PANTHER BETA-GALACTOSIDASE 14 2 122 - -
Cca09g00479 398 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 153 191 IPR002100 GO:0003677|GO:0046983
Cca09g00479 398 Coils Coil 232 252 - -
Cca09g00479 398 SMART madsneu2 144 205 IPR002100 GO:0003677|GO:0046983
Cca09g00479 398 Pfam Glycosyl hydrolases family 35 7 121 IPR031330 -
Cca09g00479 398 Gene3D Glycosidases 1 134 - -
Cca09g00479 398 SUPERFAMILY SRF-like 145 222 IPR036879 GO:0003677|GO:0046983
Cca09g00479 398 PANTHER BETA-GALACTOSIDASE RELATED 2 122 IPR001944 GO:0004553|GO:0005975
Cca09g00479 398 PRINTS Glycosyl hydrolase family 35 signature 62 77 IPR001944 GO:0004553|GO:0005975
Cca09g00479 398 PRINTS Glycosyl hydrolase family 35 signature 99 114 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00479 Cca-Chr9 11818100 11824682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00479 4 128 Glycoside Hydrolase AT1G31740 69.600 8.75e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g00479 Glyco_hydro_35 1.5e-29 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00479 - - ccaj:114915062 530.406