Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00473 ATGTATACTTCGAGGAAGAAAATTTCCAAGGATAAGGATGTTGAGCCCACTGAATTTGAGGAGACAGTTGCCCAGTACTTGTTTGACTTGGAGAACACCAACCAGGATCTGAAAAGTGACTTGAAAGATCTCTATATAAATCAAGCAATTCAAATGGATTTGGCTGGTAATCGCAAGGCTGTAGTCATCTACGTACCTTTCAGATTGAGGAAGTCATTCCGCAAGATTCATCTTCGACTTGTCAGGGAGTTGGAGAAGAAGTTTAGTGGGAAGGATGTTGTCTTGATTGCCACAAGAAGGATCTTGCGGCCACCAAAGAAAGGCTCTGCTGTTCAGCGCCCCCGAACCCGCACTTTGACTGCTGTCCATGATGCCATGCTGGAGGATGTTGTGTATCCTGCAGAGATTGTTGGCAAACGGGTCAGATACCGACTTGATGGGTCAAAAGTAATGAAGGTTTTCTTAGACCCCAAGGAACGCAACAACACTGAGTACAAGCTGGAGACTTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGTATCCAATCACAGAAGCCTGA 576 0.4444 MYTSRKKISKDKDVEPTEFEETVAQYLFDLENTNQDLKSDLKDLYINQAIQMDLAGNRKAVVIYVPFRLRKSFRKIHLRLVRELEKKFSGKDVVLIATRRILRPPKKGSAVQRPRTRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKVMKVFLDPKERNNTEYKLETFSGVYRKLTGKDVVFEYPITEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00473 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
Cca09g00473 191 Coils Coil 27 47 - -
Cca09g00473 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Cca09g00473 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Cca09g00473 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00473 Cca-Chr9 11753235 11755788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00473 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 81.675 1.73e-117 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00473 K02993 - gmx:100500684 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00473 09 11753235 11755788 Cca09g00473 09 11753235 11755788 ECH