Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00469 ATGGCTCCCAAACAACCTAGTACGGGTTTGTTTGTTGGATTAAACAAGGGTCACGTTGTTACCAAGAAGGAGTTGCCTCCACGCCCCTCAGATCGTAAGGGGAAAACTAGTAAGAGGGTGCACTTTGTGAGGAGCCTTATAAGAGAAGTTGCTGGGTTTGCACCATATGAAAAGCGTATAACTGAGTTACTTAAGGTTGGAAAAGATAAGAGAGCACTCAAGGTTGCAAAGAGAAAGCTTGGCACTCATAAACGTGCCAAGAAGAAGAGAGAGGAGATGTCCAATGTTCTCCGGAAGATGAGGGCTGGTGGAGCTGGAGACAAGAAGAAATAA 333 0.4535 MAPKQPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00469 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Cca09g00469 110 MobiDBLite consensus disorder prediction 87 110 - -
Cca09g00469 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Cca09g00469 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Cca09g00469 110 MobiDBLite consensus disorder prediction 1 37 - -
Cca09g00469 110 Gene3D 60S ribosomal protein L36 1 108 IPR038097 -
Cca09g00469 110 MobiDBLite consensus disorder prediction 79 110 - -
Cca09g00469 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00469 Cca-Chr9 11623757 11625875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00469 7 110 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 83.654 3.36e-58 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00469 K02920 - gmx:100526979 216.468