Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00465 ATGTCTATGTTCCCAAAGATAGAGTCACCAACCATCATCAGGGTTATGGATTTGTTGAATTCTAGAGCCATCAAGGTGCTTAACATGATTAAGTTTTATGAAATTTTGCTTAATCATGATAAAGGCATCCAAGGGAAGATGAGGGATTACCAACTAGTTGGACTAAATTGGCTCATACGCTTGTATGAGAATGGAATAAATGGAATTCAGGCTGATGAAATGGGGCTCGGTAAAACATTGCAAACTATATCCTTACTGGGTTATTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAAGTGGATGAATGAGATTCGGCGCTTTTGTCATGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGTGAAAGTTCCTTGATAGATGGTTTACATCTTTTGTCAAATTCTCCTCCTTGA 456 0.3904 MSMFPKIESPTIIRVMDLLNSRAIKVLNMIKFYEILLNHDKGIQGKMRDYQLVGLNWLIRLYENGINGIQADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGKWMNEIRRFCHVLRAIKFLGNPDERSESSLIDGLHLLSNSPP 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00465 151 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 151 IPR014001 -
Cca09g00465 151 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 38 135 - -
Cca09g00465 151 PANTHER SNF2/RAD54 HELICASE FAMILY 38 135 - -
Cca09g00465 151 Pfam SNF2-related domain 65 134 IPR000330 GO:0005524|GO:0140658
Cca09g00465 151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 135 IPR027417 -
Cca09g00465 151 Gene3D - 20 148 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00465 Cca-Chr9 11464364 11465366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00465 50 118 RAD5 or RAD16-like Gene Family AT1G05120 39.189 1.18e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca09g00465 SNF2_N 2.9e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00465 K11654 - ccaj:114916033 232.646