Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00438 ATGTTCCCTTACAGTTCCACCCCTTACCCTTCCTTCCCGTCTTCATGTTCTTCTTCATACCCTCCTTTTCCTTTTCTCAACCTTGACAATGCTTCTGCAAGCAACACCCTTCTTCATGATCCACTTTCTGTGCCTTACATACCAACTCATAATAACCCTCCAAGCATCCAAGAAGCACTGAGCAATTTGCCAGTCACAGTCACAGATCATAACTGTGGTGGTGGTGGTTCTGCAATGACCAAACCGAACCCAAGTGGTGGTGGTGCTCCTCACTATGGCATTTCTTGTTTCCTTGCAAAGAAGCCTGCTAAGAAGGACAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGGGACCGAAGGGTGAGGTTGTCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAGGACATGCTAGGGTTTGACAAAGCCAGCAATACCCTTGAGTGGCTCTTTAACAAGTCAAAGAGAGCAATTAAGGAGCTGGCAAGGAGCAAGAGCAACAATAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCCGAGTGTGATGATGACTGTGAAGTTGTTTCTGAGATCAAACAGAAACAGCAACTCATCACTTGTGATGCTGCTACTCCACACAACCTACAACAAGGGTTAGATTCGAGTGATAGCAAGTCACCAACATTAATGGCTGCAAGAGAGAGGATGAAGTTGAAAAGGTCACAGAAGGAACCTGCAaagatgaaggagtcaagggagaaagcaagagcaagagcaagggaaaggactagtaacaagaTTATGTGCAATGTGAACACCAACACAGGGAGGGTGCAACAAGACTTGAAGAAAAAGTGCCCTGCAATTGAAAATAACCACTCTCAAATCATGCATCAATCAAGGTCACCTACTCACCCTCACCACCTCATGGGAAGTGAAGCACCTAGAGATGACTTCAATGTTATTGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCCGTCCTTGATGTCCTCTTCTCATCATCATCACCAAAACCTTGCAATCCCTAAGGAACCACCATGTTTCAACAACAACAGCAGTGAGTACCACCCCTTCTCCAATTTGTCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCTATAGCTAGCATGAATCTGTCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1224 0.433 MFPYSSTPYPSFPSSCSSSYPPFPFLNLDNASASNTLLHDPLSVPYIPTHNNPPSIQEALSNLPVTVTDHNCGGGGSAMTKPNPSGGGAPHYGISCFLAKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKSNNSEEGAKSFSSSSECDDDCEVVSEIKQKQQLITCDAATPHNLQQGLDSSDSKSPTLMAARERMKLKRSQKEPAKMKESREKARARARERTSNKIMCNVNTNTGRVQQDLKKKCPAIENNHSQIMHQSRSPTHPHHLMGSEAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLAIPKEPPCFNNNSSEYHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00438 407 MobiDBLite consensus disorder prediction 163 183 - -
Cca09g00438 407 MobiDBLite consensus disorder prediction 232 256 - -
Cca09g00438 407 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 406 - -
Cca09g00438 407 ProSiteProfiles R domain profile. 244 261 IPR017888 -
Cca09g00438 407 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 406 IPR005333 GO:0003700
Cca09g00438 407 Pfam TCP family transcription factor 103 262 IPR017887 -
Cca09g00438 407 ProSiteProfiles TCP domain profile. 104 162 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00438 Cca-Chr9 10648652 10650630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00438 100 371 TCP Transcription Factor Family AT1G67260 33.571 6.06e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca09g00438 TCP 1.4e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00438 - - gmx:100801549 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00438 09 10648652 10650630 Cca03g00731 03 14452771 14454446 ECH
Cca09g00438 09 10648652 10650630 Cca11g02102 11 46569339 46570765 ECH
Cca09g00438 09 10648652 10650630 Cca09g00438 09 10648652 10650630 ECH
Cca07g02352 07 52102017 52103221 Cca09g00438 09 10648652 10650630 ECH