Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00437 ATGGATCCCTCTCGCCGCGCCCCACGCGCAGTGATCGATCCCGTCCCGAAGTTCCGCCAAGTCGGGTTCTTCGCCCCGCCCGAGCGCTCCCAATCGGGTCCTCCCGACCCGACCCACTCCTCTCCCCCAATCTCCAGCTCCCTCTCTCCGGTCATGATCCCGCCGCCGCGCCACCTCTCCGACAACCTCCTCCTCCACGCCCTCCCCGCCGCCTCCCCGCTCCGCCCCGACTCCCCCGCGGCACCCGGGACCTCCTTCGACGCCGCCGATTTCTTCCCCGCGCTGCCGTCGCCCGCGCCGTCCTCCTCCTACTCCAGCAGGATCGCCGGCGAGGGAGGCTTCTTCAACGGCGCCGCCGGGAAGGTGGCGGCCTCGTCGTTCCCCCGCGGCGGATTCGACCTGACGGCGATGAAGGCAAGCGTCGTGCCGGCGAGCGAGCTGACCACGGTTTCGGTGGTGAAAGATTCGCTCGGGATTCCCGATAAAGAGAAAGGAAACAAAGTAGGAGGGTCAGCAGTGGAAGTGAAAGACCAATCTAGTAGTTCAAAACAGCAGAAACAAAAAACCTCAAAAGCTGAAAGACGGGCTCTTCAAGAAGCTCAACGAGCTGCAAAGGCTGCTGCAAAAGCTGACGGAAATAAGGCATCTGGAACTGCGGCTTCAATGAATGCAAAATCAGCTAAAGCTGTAAAGCCTGCACAGAAAGTTGATAATGCAGCAGTTGCTGCCTCTGAAAAGAAGGGAGGTGATATCCCACCAGAAAAGGATAGAAAGAAAGATGCTCCTCAACCACGCATGCAGTATGATGACAAGAGCCGAGTGGAGAAAGCTAAACGTCGGTCTGTGGTGAAACAAACTGAAGCTAGGAACAGAGTTGAGTTGTTCAGGCATTTACCACAGTATGAACATGGGAGTCAGCTTCCAGATCTTGAAGCAAGGTTTTTCCATCTTTCTCCAGTGCACCCTGCTGTTTACAAGGTGGGTTTGCAGTATCTAACTGGAGATATATCTGGTGCCAATGCTCGTTGTATTGCAATGCTTCAAGCATTTCAAGAGGCCATCAAAGACTACAAGGTTCCAGTTGAGAAGACTCTGGTGAGAGACTTAACAGCAAAAGTTAGTAGTTATGTATCATTTCTTATTGAGTGCCGACCTCTATCAATCAGCATGGGAAATGCAATTAGGTTTCTCAAAAGTCGGATAGCCAAGCTACCTTTGACCTTGTCTGAATCAGAAGCAAAAGCTTCACTCCAGTCAGATATTGAGCGTTTTATTAGTGAAAAGATTATACTTGCCGACAAGGTGATAGTGAAGCATGCTGTCACCAAAATAAGAGACGGTGATGTCCTTCTAACTTATGGGTCCTCATCAGCTGTTGAAATGATACTATTACATGCACATGAGTTGGGAAGACAGTTTCGTGTTGTGGTAGTTGACTCTCGTCCAAAGCTTAGAGGGCGACTTTTACTTCGCAGGCTTGTGGAGAAAGGTCTTAGCTGTACATATACTCATATAAATGCTGTTTCCTACATAATGCATGAAGTTACTCGAGTTTTTCTGGGTGCTTCATCAGTTTTATCTAATGGAACGGTATATTCAAGGGTAGGGACTGCATGTGTTGCAATGGTTGCTCATGCATTCCGTGTGCCTGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAACGGGTACAGTTGGACTCAATTTGCTCAAATGAACTTGGTGATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTCAACTACTTGGATGGATGGGCCAATATTGAAAATATGCAACTTTTAAATTTGATTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGGTTCCCCCCACAAGTGTGCCTGTAATTGCAAGAGAATATGGGAGAGAACAGGTCTGGATATAA 1938 0.4917 MDPSRRAPRAVIDPVPKFRQVGFFAPPERSQSGPPDPTHSSPPISSSLSPVMIPPPRHLSDNLLLHALPAASPLRPDSPAAPGTSFDAADFFPALPSPAPSSSYSSRIAGEGGFFNGAAGKVAASSFPRGGFDLTAMKASVVPASELTTVSVVKDSLGIPDKEKGNKVGGSAVEVKDQSSSSKQQKQKTSKAERRALQEAQRAAKAAAKADGNKASGTAASMNAKSAKAVKPAQKVDNAAVAASEKKGGDIPPEKDRKKDAPQPRMQYDDKSRVEKAKRRSVVKQTEARNRVELFRHLPQYEHGSQLPDLEARFFHLSPVHPAVYKVGLQYLTGDISGANARCIAMLQAFQEAIKDYKVPVEKTLVRDLTAKVSSYVSFLIECRPLSISMGNAIRFLKSRIAKLPLTLSESEAKASLQSDIERFISEKIILADKVIVKHAVTKIRDGDVLLTYGSSSAVEMILLHAHELGRQFRVVVVDSRPKLRGRLLLRRLVEKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTVYSRVGTACVAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGDPDVISNVLGREDVNYLDGWANIENMQLLNLIYDATPSDYVSMIVTDYGMVPPTSVPVIAREYGREQVWI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00437 645 Pfam Initiation factor 2 subunit family 336 628 IPR000649 GO:0044237
Cca09g00437 645 MobiDBLite consensus disorder prediction 248 283 - -
Cca09g00437 645 SUPERFAMILY NagB/RpiA/CoA transferase-like 319 638 IPR037171 -
Cca09g00437 645 MobiDBLite consensus disorder prediction 71 92 - -
Cca09g00437 645 MobiDBLite consensus disorder prediction 152 283 - -
Cca09g00437 645 Gene3D - 432 638 IPR042529 -
Cca09g00437 645 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 645 - -
Cca09g00437 645 Coils Coil 183 203 - -
Cca09g00437 645 MobiDBLite consensus disorder prediction 1 55 - -
Cca09g00437 645 PANTHER TRANSLATION INITIATION FACTOR EIF-2B DELTA SUBUNIT 1 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00437 Cca-Chr9 10557619 10565714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00437 4 645 Eukaryotic Initiation Factors Gene Family AT5G38640 66.112 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00437 K03680 - gmx:100775998 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00437 09 10557619 10565714 Cca09g00437 09 10557619 10565714 ECH
Cca07g02351 07 52079850 52086237 Cca09g00437 09 10557619 10565714 ECH