Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00434 ATGCACGCCAAAGGTTCTAATATCGGAAAAACCTGCATAGAGTTACCAGGAAATTCTGCATCATTTGGTCCAAATCTTCCTCTGCAGGCAGGTTTTGATTTAAGCAATCAATATAATGCAAGGAATCAAGTAGGGATCTTTCCAGACTGGCGTAAGAATACTGCAATCAGTCACGGCCGAAATTTGATTAGAAATAAAATTTCTGCATTTTTCAGGTGCCGACTCCAATATGACAAAGAACGGGCTTCAGTTATAACAAATATTCTGGAAAACGAGTTATTTATTAATGCTTCTTCACAGGAGGAGTACATGAACCAGAATACGTTGATACATCGATTGAATACTGTACTGAAAAAGTTGACAGGAACAAAGTGCAGCCAAAATGCTGATAGTTCTATTACTTGTACATCTAAGACAGTGCCCTCTTCAGATTTATCACAACCTGCTTTTCAGAAAGTGTTCAACAATCAATCATCTGATAAGTGTTCATCAATCACTACATGCACCGATGTGGATGTGCTTTCTAACTTTTCTGTTTCTGCTGCGAATATTAATCTGGAAACTAGGTCCAAATCAATTGATAGTCATTTTCCTCAGCAACATCCAAACAATTGGGAGGTTGATCCAATGAAGCATGTAGATTGTTCAATGGCTATGATTACTACAAAGGGAAAGTCCCTCCAATCTGAATGTTCAAATTCTCTGAGCCTTCCACATGTCTCAAGAGAATTTTCAAGAGTTTCCAATCTTTTTCCTGGCTCAAGCAGCTTTGGAGATATAAGGCAACATCAACACCAGAAGCCAGATTTTCAACAGAATCTCAAACATTTTAGGCAGTCACATGTTCTTCATGATAAAACTTCTATTGTTCAGCCTAATTCTTGCTTTGTCAGTCAAGGTGAACATCTCCGTCAAATATTGGGTCAGAAAACATTGAAACAGCCGGAGCATTTAAGTCCCGATGCGGATAAACAGTTCACTTCAGGAAGCTCAGCAGCAAATCTTTTTGGTTTAGATGGATCTGCTAATATGAATATCGATAGTAATTTTGAACTAACAGATATACAAAGGATCGTGCTTCAATATCTTTTCTACAAAAAAGCAAGCGATTTTTCACTGGATCTTGCTATGAAACATCTGCATTCAAAAGCTTGTGGTGAAGGGATATGTAATTGTGGAAAGTATAGCATGCTGTTATTGCATTTTGATGCCTGTCAAGATGGTAATTGTCAAACATGTTCCTCCTGGAAATTGCTAGGCACTTATACTCGTGAGCGTTATTTGAAATCGAATAGCCTTAATAAGAGTTCTGTTGTAAGAAAAAATAATGCCTCTTACGATAGTTCTGAACACATGGTATCACCTGCTGTCAAAAGAAGAAAAATGAAATCTGCCTTTGGTGATCCTTTAATTAATAATGCAAGTTTGGATTGGTGGACTCACAAAATGGTTCAATTGCAGCAACAGCCAGAATCTTCGCTCCCACCTATCTATTCTAAAGTTTCAGGGTGCAATTCCGAACAACTTACAAATCCAATGCTTGATTCAATAATCAATAATGAGATAAAGAGCAATCAGGAAACAGTCCGCAACAGCGATCATGTGAAAGACATCAGCAACTCAGAAGAAGCTGTTATTAGATCGAATTCCAACATTCATACTCTCTACAACGAACTTATGTCTGCTGATATAAACAACGTCAGAATCTCAGAGGAAACTATCGTTGGATCTAATTCCAATGTGCATATTCTCTGCACAGAACCTATGCCAGCAGATGTAGAGAGCATACAAGGTGGAACTGGGTTGACTCAGGATGGGATAAATGATACAAAGAAAGCCATGGAGTCAAAAGCTGATCAAGAGAAGGAAACGGAATCCTCAAATGCAACGGTTAATACTGTTTCCTTAACTGATTTTTTCACATGTAATCAAATAACTGAACACATTGCAAGTCTGAGAAAGCAATTTAATCAGAGTACAACGGTTGAAGAACCGGCAGTTGATGGTTTTGAATGCCAGTTATGTGAAATGGGAACTCTTCATTTTGCCCCCCTGCCAATTTATTGCTTTTGTTGCGGCATCCGTATAAAGCGAAACTCATACTATTACTATAGAAGAGAAGAAGATGATACACAACCTTGCTTTTGCACTGTGTGTTATAGGAATTCTCGAGGGGGTAACATCACATTCAATGGGACATCTGTTTCCAAGACAGATCTTGATAAAAAGACAAACAATGGAGAATTTGAAGAAGCATGGGTTGAATGCAGTAAATGCAAAAGTTGGCAGCATCAAATATGTGCACTCTATAACGATAAAAGAGATTTGGACAACAGTGCTGAGTATACGTGTCCTATATGTCGCTTAAAGGAAATTGAAAATGGAATGCATGTACCCTTACCAAAGAATGCTATGTTTGGTGCTAAGGACTTGCCAAGCACCATGCTAAGTGACCATATAGAGAGGCGACTTTTTAAGCGTCTCATGCAAGAGAGTGAAGATTGGGCAAAAGTCGAAGGGAATAAGAATCTTGATGAAGTTTTATTAGCAGAAAATCTTTCTGTTAGAGTAGTGTTATCTGTCGAGAAACAATTGAAAGTGAAGAAACAGTTTCTAGAGATATTTGCGGAGGAGAATTACCCAGCCGAGTTTCCTTATACATCAAAAGTTATTCTTCTGTTTCAGCAGATTGAAGGTGTAGATGTATGCCTTTTCGCAATGTATGTCCAGGAGTTTGGATCCGAATGTGGCAATCCAAATAAGCGTAGTGTGTATATTTCATATCTTGATTCTGTCAAGTATTTTCGGCCCCAAAGAGCGACCATGAATGGAGAAGCTCTTCGTACCTTCGTTTACCATGAGATATTGATTGGATATCTAGACTTTTGCAAGAAACGTGGTTTCACAACTTGCTATATATGGGCCTGTCCACCTATAAAGGGGGAAGATTACATACTATATTGTCATCCTGACACTCAAAAAACACCGAAGAATGATAAACTTCGACACTGGTATCTTTCAATGCTAAGAAAGGCTGCCCAAGAAAATATCGTTGTTGGTTTAACCAACATATACGATAATTTCTTTGTTTCTAGTGGAAACTGGGACTCCAAGGTAACAGCTGCTCGTTTGCCTTACTTTGATGGAGACTTCTGGTCTGGTACTGCTATGGACAAAGTCAGGATCATTGAGCAAGAGAGTGGAGGAGACTATGAAAAGATGTTGAAACTAGTACCAAAAAGAACTTTAAAGGCTATGGGACATGTAGATCCTTCAAAAGGAACCGCCAAAGACATTCTAGTGATGCAAAAACTGGGACAAGCCATACTACCATTCAAGGAAGATTTTATCATAGTTCAATTACGGTATGTTTGCACGCACTGCAATGAAGTGATAGTGTCTGGAAAGCGATGGTTTTGCACTGCCATTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATACTTCTGATTCACACGCCTCTGTCAATGGCGATAAGCATAGACTTTGTCAGGACCTCATGGATGATGATATCCTTTGTGATACTAAGGAGAATGATGTGACCCTTGATAATGAGTTCTTTGATACTAGGCATAACTTTTTGAGCTTTTGCCAAAAGAATAGCTTTCAGTTTGACTCGCTGCGCCGAGCCAAGTATTCCTCAATGATGATCCTCTATTTTCTAAAGAATCCTTCTTTGCTGAATGTTGGAACAATATGTCGTGTTTGCAATAAACAAAACGTTTACCAGTACCACTGGAAATGTCAGAGTTGCCCAGAGTTCATTGTCTGCGCTGCATGCTATGAAAAGAGAGGTGCTAATTGCCATGCACACACGTTGATTCAAACTTATTCAACAGTTCTAAGTCCTTCAGGGAATCAAGAGTTAAATCCGAAAGCGGCACTGATACAGGAACTGCAAGATGTTGTAAAGCATGCATCGCAGTGTCGCTCAACCAAAACTCAACCATGCACATATCTACACTGTCTTCAAATTAAAAAACTGTTCTCTCATGCAAGTAGGTGCACCATCCGAATTTCTGGCGGATGTAGATACTGCAAGAAGGTTTGGGTGGCACTAGCTGTACACTCAAGGAGTTGTAGGGACTCAGGATGTTGCATCCCTCGTTGCAGGGATCTGAAGAAGCAAGCAGAATGGATAGCAACGCAATCTGAATCGCGACGTAGAGCTGCAGTTTTGGAAGGCAACAGCGAACTACTCTCTCCTCGTTGA 4236 0.3945 MHAKGSNIGKTCIELPGNSASFGPNLPLQAGFDLSNQYNARNQVGIFPDWRKNTAISHGRNLIRNKISAFFRCRLQYDKERASVITNILENELFINASSQEEYMNQNTLIHRLNTVLKKLTGTKCSQNADSSITCTSKTVPSSDLSQPAFQKVFNNQSSDKCSSITTCTDVDVLSNFSVSAANINLETRSKSIDSHFPQQHPNNWEVDPMKHVDCSMAMITTKGKSLQSECSNSLSLPHVSREFSRVSNLFPGSSSFGDIRQHQHQKPDFQQNLKHFRQSHVLHDKTSIVQPNSCFVSQGEHLRQILGQKTLKQPEHLSPDADKQFTSGSSAANLFGLDGSANMNIDSNFELTDIQRIVLQYLFYKKASDFSLDLAMKHLHSKACGEGICNCGKYSMLLLHFDACQDGNCQTCSSWKLLGTYTRERYLKSNSLNKSSVVRKNNASYDSSEHMVSPAVKRRKMKSAFGDPLINNASLDWWTHKMVQLQQQPESSLPPIYSKVSGCNSEQLTNPMLDSIINNEIKSNQETVRNSDHVKDISNSEEAVIRSNSNIHTLYNELMSADINNVRISEETIVGSNSNVHILCTEPMPADVESIQGGTGLTQDGINDTKKAMESKADQEKETESSNATVNTVSLTDFFTCNQITEHIASLRKQFNQSTTVEEPAVDGFECQLCEMGTLHFAPLPIYCFCCGIRIKRNSYYYYRREEDDTQPCFCTVCYRNSRGGNITFNGTSVSKTDLDKKTNNGEFEEAWVECSKCKSWQHQICALYNDKRDLDNSAEYTCPICRLKEIENGMHVPLPKNAMFGAKDLPSTMLSDHIERRLFKRLMQESEDWAKVEGNKNLDEVLLAENLSVRVVLSVEKQLKVKKQFLEIFAEENYPAEFPYTSKVILLFQQIEGVDVCLFAMYVQEFGSECGNPNKRSVYISYLDSVKYFRPQRATMNGEALRTFVYHEILIGYLDFCKKRGFTTCYIWACPPIKGEDYILYCHPDTQKTPKNDKLRHWYLSMLRKAAQENIVVGLTNIYDNFFVSSGNWDSKVTAARLPYFDGDFWSGTAMDKVRIIEQESGGDYEKMLKLVPKRTLKAMGHVDPSKGTAKDILVMQKLGQAILPFKEDFIIVQLRYVCTHCNEVIVSGKRWFCTAIECKKFQECERCHTSDSHASVNGDKHRLCQDLMDDDILCDTKENDVTLDNEFFDTRHNFLSFCQKNSFQFDSLRRAKYSSMMILYFLKNPSLLNVGTICRVCNKQNVYQYHWKCQSCPEFIVCAACYEKRGANCHAHTLIQTYSTVLSPSGNQELNPKAALIQELQDVVKHASQCRSTKTQPCTYLHCLQIKKLFSHASRCTIRISGGCRYCKKVWVALAVHSRSCRDSGCCIPRCRDLKKQAEWIATQSESRRRAAVLEGNSELLSPR 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00434 1411 SUPERFAMILY RING/U-box 1100 1164 - -
Cca09g00434 1411 SUPERFAMILY TAZ domain 1304 1383 IPR035898 -
Cca09g00434 1411 Gene3D - 1234 1284 IPR043145 -
Cca09g00434 1411 SUPERFAMILY RING/U-box 1217 1285 - -
Cca09g00434 1411 Pfam TAZ zinc finger 1305 1378 IPR000197 -
Cca09g00434 1411 SMART KAT11_2 839 1132 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca09g00434 1411 Gene3D TAZ domain 1294 1410 IPR035898 -
Cca09g00434 1411 ProSitePatterns Zinc finger ZZ-type signature. 1241 1268 IPR000433 GO:0008270
Cca09g00434 1411 Pfam Histone acetylation protein 844 1053 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca09g00434 1411 PANTHER HISTONE ACETYLTRANSFERASE HAC2 524 1383 - -
Cca09g00434 1411 SMART TAZ_2 1298 1379 IPR000197 -
Cca09g00434 1411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 791 IPR013083 -
Cca09g00434 1411 CDD PHD_HAC_like 715 787 - -
Cca09g00434 1411 SMART PHD_3 715 788 IPR001965 -
Cca09g00434 1411 PANTHER CBP/P300-RELATED 524 1383 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca09g00434 1411 ProSiteProfiles Zinc finger PHD-type profile. 713 790 IPR019787 -
Cca09g00434 1411 SUPERFAMILY FYVE/PHD zinc finger 748 790 IPR011011 -
Cca09g00434 1411 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 805 1234 IPR031162 GO:0004402
Cca09g00434 1411 ProSiteProfiles Zinc finger TAZ-type profile. 1297 1381 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00434 Cca-Chr9 10527853 10539446 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Cca09g00434 HAT_KAT11 7.6e-30 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00434 K04498 - gmx:102664049 1674.45