Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00433 ATGTACGGCAAGGGTTCTAATCTCAGGAATACCTGCAAACAGTTACCAGGAAATTCTTCATCATTTGGTTCAAAACTTCCTTTGCAAACAGGTTTTGATTTAAGCCACCAATATAATACAAGGGATCAAGTAGGGGTCTTCCCAGACTGGCGTAAGAATATTGCAATCATTCATGAGCGTAATTTGATTAGAAATAAAATTTTTGCAATATTCAGGTCCGGAATTCATTATAAAAAAGAACAGGCATTCGTTATTGCAAATGCTCTGGAAAACGAGCTATTTATCGAAGCTTCTTCACAGGAAGAGTACATGAATGAGAATACATTGATAGAACGAATGGATAGTAAACTGAAAAAGTTAACAGAGACAAAATGCAGGGAACAAGCAGATAGTTATACTATTTATACATCCAAGACGCTGCCCCCTTCTGGTTTACCACAACCTGCTTTTCAGAAAGTGTACATCAATAAATCACCTAACTTTTCTGTTTCTGCTTGGGTTAGCAATCTGGAAGCTAGGTCCAAATCAATTAATTACCATTCTCCACAGCAACAGCCAGATAATTGTGAAAATTACCATCAAATGTTGGAGCACAAAACATTGAAACAGCCAGAATATTTTACAAGAAGTCTCAATGTGGATAAACAGTTTACTTTAAGAAGCTCAGCAGCAGACCTTTTGGATTTAGATGGATCTGCTAATATGAATTCAGGCAGTAGTTCCATAGTTTCAGATACACAGAGGATCCTTCTTTTATATTTTTACTGCAACAATTTAAAAGATTTTTCACGGGATCTTGTCACGAAACATTTGCATTCAACAGTTTGTGGTGAAGGGACATGCACTTGTCAACAGTATAGAAAGCTGTTACTGCATTTTGATGACTGTCAAGATGATAACTGTCAAATTTGTTATTCCTGGAAATTGCGGGGCACTAATATTCAGAATAGCGTAATTAAGGATTATGTCGTAAGAAAAAATGTTTCTTCAAGTAGTTCTGAACACATGTTATCACCTGCTGTCAAAAGAAGAAAAATAGAGTCTGCTTTTGATGTCTCTTTAATCGACAGTGCAAGTTGGGATATGTCGACTCACAAACTGGCTCAACATTATTCTTATGAAGCACTTTCAAATTTTCAGCAACAACCAGAATCTTCACTCCTGTTTAATTATTCTAATGTTTCAGAGTGCAATTTTAAACAATTTCCAATGCCTGATTCGATCAGTAATACTGAGATAAAGAACAATGTGATAGATGATGCATTTGGGAATATTTCTAAGGATGAAACAATTCTCTCTAAAGACTTAGACACTGATCACATGTCAGAAGAACCAGACCCCAAAATCAATGATGGGAAAGTCAGCAGAAACCTAGAGGAAACTGTCACTAGATCTCATTCCGTTGTGTATGCTCTCAAAGATCTTATGTCTGCAAATATAGAGGAAATTGTTCCCATTAGCGATCATGTGAAAGACATAAGAAACTTAGAGCAAGGGAAGGAAGATCATGTGAAAGACATCAGCAACTTAGAGCAAGGGAAGGAAGCGGAGTCCCCAAATCCAACAGTTAATACTGTTTCTCTAACTGATTTTTTTACATGTGATCAAATAATGGAACACATTGCAAGTCTGAGAAAGCAATTTAATCAGAGTGCAAAGATTGAAGAACAAGGAGTTGATGTTTACAAATGCCAGTTATGTGAAATTGGAACACTTCCTTTTGCCCCCGTGCCAATTTATTGCTTTTGTTGCGGCATCCGTATAAAGCGAAACTCATACTATTACTATAGAAGAGAAGAAGATGATACACAACCTTGCTTTTGCACTGTGTGTTATAGGAATTCTCGAGGGGGTAACATCACATTCAATGGGACGTCTGTTTCCAAGACAGATCTTTATAAAAAGACAAATAATGGAGAATTTGAAGAAGCATGGGTTGAATGTAATAAATGCAAAAGTTGGCAGCATCAAATATGTGCACTCTATAACGATAAAAGAGATTTGGACAACAGTGTTGAGTATACGTGTCCTATATGCCGCTTAAAGGAAATTGAAAATGGAATGCATGTACCCTTACCAAAGAATGCTATGTTTGGTGCTAAGGACTTGCCAAGCACCATGCTAAGTGACCACATAGAGAGGCGACTTTTTAAGCGTCTCATGCAAGAGAGTGAAGATTGGGCAAAGGTCGAAGGGAATAAGAATCTTGACGAGGTTTTATTAGCAGAAAATCTTTCTGTTAGAGTAGTGTTATCTGTCGAGAAACAATTGAAAGTGAAGAAACAGTTTCTGGACATATTTGTGGAGGAGAATTACCCAGCCGAGTTTCCTTATACATCAAAAGTTATTCTTCTGTTTCAGCAGATTGAAGGTGTAGATGTATGCCTTTTCGCAATGTATGTCCAGGAGTTTGGATCCGAATGTGGCAATCCAAATAAGCGTAGTGTGTATATTTCATATCTTGATTCTGTCAAGTATTTTCGGCCCCAAAGAGCGACCATGAATGGAGAAGCTCTTCGTACCTTCGTTTACCATGAGATATTGATTGGATATCTAGATTTTTGCAAGAAACGTGGTTTCAAAACTTGCTATATATGGGCCTGTCCACCTATAAAGGGGGAAGATTATATACTATATTGCCATCCTGACACTCAAAAAACTCCGAAGAATGATAAACTTCGGCACTGGTATCTTTCAATGCTAAGAAAGGCTGCCGAAGAAAATATCGTTGTTGGTTTAACTAACATATACGATAATTTCTTTGTTTCTACAAGAAATTGGAACTCCAAAGTAACAGCTGCTCATTTGCCTTACTTTGATGGAGACTTCTGGTCAGGTGCTGCTATGGATAAAGCCAGGATCATTGATCAAGAGTGTGGAGGAGATTATGAAAAGATGAAGAAACTAATGACGAAAAGAACTTTGAAGACTATGGGACATGTAAATCCTTCAAAAGGAACTGCCAAAGACATTCTAGTCATGCAAAAGCTGGGACAAACCATATTGCCATTCAAGGAAGATTTCATCGTAGTTCAATTACAGTATGTTTGCATGCACTGCCATGAAGTGATAATGTCTGGGAAGCGATGGTTTTGCACTGCCACTGAATGCAAGACATTTCAGGAGTGTCAAAGATGCCATACTGCTAACTCACACACCTCTCGCAACGGTGAGAAACATACACTTCGTCAGGTCTTCATGGATGATATCCTTTGTGATACAAAGGAGAATGATGTGATCCTTGACAATGGGTTATTTGACACCAGGCATAACCTTTTGAGTTTTTGTCAAAGGAATAGCTTACAGTTTGACTCACTCCGCCGAGCCAAGTATTCCTCAATGATGATCCTCTATTTTCTAAAGAATCCTAATTTGCTGAATGTTGGAACAATATGTCGCGTTTGCAATAAACAAAACGTATACCAGTGCCACTGGAAATGTCAGAATTGCCCAGAGTTCACTGTCTGCTCTGCATGCTATAACAAGAAAGGTGCTAATTGCCATGCACACACGTTGACTCAAACTTTTTCAACAGCACTGAGTCCTTCGGGGAATCAAGAGTTGAATCAGAACTCGGCACTGATACAGGAACTGCAGGATGTTATAAAGCATGCATCTCAGTGTCACTCAACAAAAACTCAACCATGCACATATCCACATTGCCTTCAACTTAAAAAGCTGTTCTCTCATGCAAGTAGGTGCACCATTCGAGTTTCTGGGGGATGCCAATATTGTAAGAAGGTTTGGGTGGCACTATCTGTACACTCAAGGAATTGTAGAGACTCAGGATGTCAAATCCCCCGTTGCATGGATCTGAAGAAGCATGCAGAATGGATAGCAACGCAGTCTGAATCGCGGCGTAGAGCTGCAGTTTTGGAGGCGACAGCAAACTCTCACCCTCATTGA 3906 0.3874 MYGKGSNLRNTCKQLPGNSSSFGSKLPLQTGFDLSHQYNTRDQVGVFPDWRKNIAIIHERNLIRNKIFAIFRSGIHYKKEQAFVIANALENELFIEASSQEEYMNENTLIERMDSKLKKLTETKCREQADSYTIYTSKTLPPSGLPQPAFQKVYINKSPNFSVSAWVSNLEARSKSINYHSPQQQPDNCENYHQMLEHKTLKQPEYFTRSLNVDKQFTLRSSAADLLDLDGSANMNSGSSSIVSDTQRILLLYFYCNNLKDFSRDLVTKHLHSTVCGEGTCTCQQYRKLLLHFDDCQDDNCQICYSWKLRGTNIQNSVIKDYVVRKNVSSSSSEHMLSPAVKRRKIESAFDVSLIDSASWDMSTHKLAQHYSYEALSNFQQQPESSLLFNYSNVSECNFKQFPMPDSISNTEIKNNVIDDAFGNISKDETILSKDLDTDHMSEEPDPKINDGKVSRNLEETVTRSHSVVYALKDLMSANIEEIVPISDHVKDIRNLEQGKEDHVKDISNLEQGKEAESPNPTVNTVSLTDFFTCDQIMEHIASLRKQFNQSAKIEEQGVDVYKCQLCEIGTLPFAPVPIYCFCCGIRIKRNSYYYYRREEDDTQPCFCTVCYRNSRGGNITFNGTSVSKTDLYKKTNNGEFEEAWVECNKCKSWQHQICALYNDKRDLDNSVEYTCPICRLKEIENGMHVPLPKNAMFGAKDLPSTMLSDHIERRLFKRLMQESEDWAKVEGNKNLDEVLLAENLSVRVVLSVEKQLKVKKQFLDIFVEENYPAEFPYTSKVILLFQQIEGVDVCLFAMYVQEFGSECGNPNKRSVYISYLDSVKYFRPQRATMNGEALRTFVYHEILIGYLDFCKKRGFKTCYIWACPPIKGEDYILYCHPDTQKTPKNDKLRHWYLSMLRKAAEENIVVGLTNIYDNFFVSTRNWNSKVTAAHLPYFDGDFWSGAAMDKARIIDQECGGDYEKMKKLMTKRTLKTMGHVNPSKGTAKDILVMQKLGQTILPFKEDFIVVQLQYVCMHCHEVIMSGKRWFCTATECKTFQECQRCHTANSHTSRNGEKHTLRQVFMDDILCDTKENDVILDNGLFDTRHNLLSFCQRNSLQFDSLRRAKYSSMMILYFLKNPNLLNVGTICRVCNKQNVYQCHWKCQNCPEFTVCSACYNKKGANCHAHTLTQTFSTALSPSGNQELNQNSALIQELQDVIKHASQCHSTKTQPCTYPHCLQLKKLFSHASRCTIRVSGGCQYCKKVWVALSVHSRNCRDSGCQIPRCMDLKKHAEWIATQSESRRRAAVLEATANSHPH 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00433 1301 SUPERFAMILY RING/U-box 1108 1163 - -
Cca09g00433 1301 Gene3D - 1125 1176 IPR043145 -
Cca09g00433 1301 ProSitePatterns Zinc finger ZZ-type signature. 1132 1159 IPR000433 GO:0008270
Cca09g00433 1301 Gene3D TAZ domain 1184 1297 IPR035898 -
Cca09g00433 1301 SMART PHD_3 607 680 IPR001965 -
Cca09g00433 1301 PANTHER HISTONE ACETYLTRANSFERASE HAC2 495 1274 - -
Cca09g00433 1301 SUPERFAMILY RING/U-box 992 1056 - -
Cca09g00433 1301 ProSiteProfiles Zinc finger TAZ-type profile. 1188 1272 IPR000197 -
Cca09g00433 1301 SMART KAT11_2 731 1024 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca09g00433 1301 PANTHER CBP/P300-RELATED 495 1274 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca09g00433 1301 SUPERFAMILY FYVE/PHD zinc finger 640 681 IPR011011 -
Cca09g00433 1301 Coils Coil 493 513 - -
Cca09g00433 1301 SUPERFAMILY TAZ domain 1195 1273 IPR035898 -
Cca09g00433 1301 Pfam Histone acetylation protein 736 945 IPR013178 GO:0004402|GO:0006355|GO:0016573
Cca09g00433 1301 ProSiteProfiles Zinc finger PHD-type profile. 605 682 IPR019787 -
Cca09g00433 1301 CDD PHD_HAC_like 607 679 - -
Cca09g00433 1301 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 697 1125 IPR031162 GO:0004402
Cca09g00433 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 683 IPR013083 -
Cca09g00433 1301 SMART TAZ_2 1189 1270 IPR000197 -
Cca09g00433 1301 Pfam TAZ zinc finger 1195 1269 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00433 Cca-Chr9 10485143 10492329 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Cca09g00433 HAT_KAT11 7.5e-30 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00433 K04498 - gmx:102664049 1479.15