Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00423 ATGGGATCGTATTCCTTAAAGAAAGAGAACCATGTGGTGGAAACTCCAACCCCACAAAGAGACCATGACGCTGATACTACCCTGTATGCCATGGTGCTAGGTTCCAACGTGGTCTTTCCTGCAGCTCTCAACGCTGCAATTGAGCTCAACGTGTTTGAGATCATTGCAAAGGAAAGCTCACAAGAGAGTGGTGGATTCATGTCACCCCTTGAAATTGCTTCCAAGTTACCAACACAAAAACAACATTGTCATGAGTTGCCAAATAGGCTTGAACGTTTGCTGCGTTTGCTTGCTAGCTACTCTCTTCTTTCTGTTTCCACTCGCACCAATGAGGATGGTAGCACAGATAGAGTTTATGGGGTCTCACCAGTGGGTAAATATTTTGTCTATGATGAAAATGGTGATGGTTATCTCGCGTCATTCACATCATTTCTGTGTCACCCTGCATTGTCAGGGGTGTGGCTGAATTTTAAGGAAGCGATCATTGATCCTGAGATTGACCTGTTCAAGAAGGTTCATGGAATGTCCAAATATGAGGGCATATCAACTTTGGTTGATGTGGCAGGTGGAATTGGACAATGTCTCAAATTGATCATCTCCAAATACCCTTCAATTAAGGGCATTAATTTTGACCTCCCACATGTGATTGAAAACGCACCACCCATTCCAGGGGTTGAGCATATCGGGGGAAATATGTTTGAAGGTGTTCCACAGGGTGATGCCATGATGCTAAAGGCTATATGCCACAATTGGTCGGATGAAAAAGCCATAGAAATTTTAAGCAATTGTTACAAAGCTTTGCCAGCAAAGGGGAAGGTCATTGTTGGGGATTTCATACTGCCAGAAGATCCAGAACCTACAAATGATTATAAAGTGGTTTCAATTCTTGATAACATCATGTTTATTACACCAGGTGGAAGGGAAAGAACTGAGAAACAATTTGAGAGTTTGGGCAACCGTTCTGGATTTTCTAGGTTTCAAGTTGTCTGTCGAGCCTTCTCTACTATGGCAgtcgatggcttgggtaagccaaatcatgtctcggtcacaggatcagaattgcagctggagctggAAAAGGCTGCTACAACTATCAATGTTGGTGCAGTAGCTGAGTCATTTGCTGATTTGGTCCCAATCCAGCCAAGATTAACAGTGCTGCCAGGCTCAGTCTTGGAGAATGCAGCTGTTGCTACTCATGTGATCAAGGATGTTGGAGCAGCTGCTCATTCAGTAGCTGTGGATTGTAATGCGGATGTAGAATTTGATTCCAATGTGATATTAGGTGTTCCAACTGCTAAGTTGATTCCTGACCAGCCACGTTCAATTGTGATACCAGGGACAGATTATGCAGCAGCTACTACACCTGTGATCATTGATGTTGGTGCAGTACCAGCTACTGATTTGGTCTCAGTCCAGCCTTGGTCAATTGTGAAGCCATGGACAGTTTTGGATAAGGCAATAGCTAAATCAGCAGCTAAGATTGGTAATGTGAATGCAACAGTTAAGGTACGTAAAGTTGGTGTAGTAGTTCAATGTAATGTGGCTGCATCAGCTGAGTCGGATGTGGGAAGTAAAGTTGGTGCAACAAATAACTCTGGACCCAAAAAGGGACGTTTATTTGCACCAAGGAATGCAGAAGCTGCTGCAACTAATATGGGTGATGCAGAAGTGAATGTAACAGCTGCGGGGTCACTTGAAGGCATGCCATCCCTTTAG 1719 0.42 MGSYSLKKENHVVETPTPQRDHDADTTLYAMVLGSNVVFPAALNAAIELNVFEIIAKESSQESGGFMSPLEIASKLPTQKQHCHELPNRLERLLRLLASYSLLSVSTRTNEDGSTDRVYGVSPVGKYFVYDENGDGYLASFTSFLCHPALSGVWLNFKEAIIDPEIDLFKKVHGMSKYEGISTLVDVAGGIGQCLKLIISKYPSIKGINFDLPHVIENAPPIPGVEHIGGNMFEGVPQGDAMMLKAICHNWSDEKAIEILSNCYKALPAKGKVIVGDFILPEDPEPTNDYKVVSILDNIMFITPGGRERTEKQFESLGNRSGFSRFQVVCRAFSTMAVDGLGKPNHVSVTGSELQLELEKAATTINVGAVAESFADLVPIQPRLTVLPGSVLENAAVATHVIKDVGAAAHSVAVDCNADVEFDSNVILGVPTAKLIPDQPRSIVIPGTDYAAATTPVIIDVGAVPATDLVSVQPWSIVKPWTVLDKAIAKSAAKIGNVNATVKVRKVGVVVQCNVAASAESDVGSKVGATNNSGPKKGRLFAPRNAEAAATNMGDAEVNVTAAGSLEGMPSL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00423 572 Pfam Dimerisation domain 42 98 IPR012967 GO:0046983
Cca09g00423 572 PANTHER O-METHYLTRANSFERASE 1 179 IPR016461 GO:0008168
Cca09g00423 572 PANTHER O-METHYLTRANSFERASE 178 341 IPR016461 GO:0008168
Cca09g00423 572 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 178 342 IPR016461 GO:0008168
Cca09g00423 572 Gene3D - 38 166 IPR036388 -
Cca09g00423 572 Gene3D Vaccinia Virus protein VP39 167 332 IPR029063 -
Cca09g00423 572 SUPERFAMILY "Winged helix" DNA-binding domain 23 132 IPR036390 -
Cca09g00423 572 MobiDBLite consensus disorder prediction 1 21 - -
Cca09g00423 572 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 178 341 - -
Cca09g00423 572 Pfam O-methyltransferase domain 169 324 IPR001077 GO:0008171
Cca09g00423 572 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 331 IPR029063 -
Cca09g00423 572 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00423 Cca-Chr9 10277203 10286236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00423 17 343 Monolignol Biosynthesis Gene Families AT5G54160 44.077 1.49e-92 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00423 - - gmx:100798295 541.191