Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00399 atgaccgaggctatccttggggttgcctttgaaaagttgagctctcttgttggaaaagagttgggacggtttctgggtttcgatcgagacatggagaggcttcaaagcatgttcactgcaatcaaggctacgcttgaagatgctgaggagaaacaattctcaagtaggactatcaaggattggctgcaaaagctgaaagatgtagctctcaagctggatgacatcatggatgagtgtgcctatgaagaattgagtctatcaaatcaggtacaaagctcttgcttatcatcttttaatcccaaacatgttgtttttcgtcacaaaatgtcaaagaaaatggaaagaataaaagagagattagatgaaattgctaaagaaaaggagcagcttcatttgactgagaggactctagagagaagaagtgaagtccgtgattggcgccaaaccttctcttccatcactgaaccacaagtctatggcagagaaaatgataagaataaaattgtagactttatggttggtgatgcttctcattctgacaatgatttagtagtgtatccaatcaaaggacctggcggacttggaaaaacaacactagcccaacttgtcttcaatcatgagagggtagtcaaacactttgagctaaaaatttgggtttgtgtttcagaagactttagtttaaaaagaatgataaaatctataatccaagcagcatctggggatgcctgtggagatttggaactagagccacttcaaaaaaaacttcatgatttgcttcaaagaaaaaaatatttacttgttttggatgatgtgtgggatgaagagcaagaaaattggaataggttgaaatctgttttgtcttgtggggcaaagggtactttcgttttggttaccactcgtcttacaaaggttgcaacaatcatgggaacaactgatccgcatgaattatcaatgttatctgacggaaattgttgggaattgtttaaacaccgagccttcggatcagatgaggtaatacaggtagaacatgaaaacatagggaaggagatagtaaagaagtgtgggggattgcctcttgcagcaacagcactaggaggtcttttacgctttgaaagaaaggaagaagcatggctcaatgttaaggaaagcaacgtgtggagttcatcagacaatataatgcctgccctaatattaagctacttgaacttgccaataaaactcagacaatgttttgcttattgtgcaatatttcccaaagatgaaagaattgaaaaacaatatttaattgaactttggatggctaatggattcatttcatctaatggaatgttaaatgctcaagacgttggtgatgatgtgtggcatgaattacactggagatcactttttcaagatcttgagatagatgaattgggcaaagttacaagtttcaagttacatgaccttgttcatgatcttgcacaatctgttgctgaagagatttgttgcattacaagggatactgatgttactactttgtctaaaagaatctaccatctgtcagacagtacgtgggggagccaccagttgcctaaagtcaaatcattgagaacctgtataatgttgaattatttgaaagaaagatttcattctagtgtgctgaaattttattctttacgcgtgcttgactttgtaaatagaaacaaattgtcatcttcaattggtaatttaaaacatctaaggtacttgaatctttcctatggaaagttcaaaactctaccagaatcgttatgtgaattgtggaatttgcaaatattgaaattagaccgttgtaatgatctccaaaagtttcctaacagtttgatatggttaaaagcactacatcaactatctttgagcggttgctactcactatcaagcttgcctcctcatatagggaagatgagttccctaagaagtttaaccatgtacattgttggcaaggaaagtgggttccttttggaagaattggaagcacttaatctgaaaggagagcttttcatcaagaatatggagaaagtaaaaagtgtaatggatgccaaaaaagtcaacatgtcaaacaagaaactaaacttgttgaggtttaaatgggcgagaaatgaagagtttgaattgcaaaataatgttgagcagattcttgaagtgcttcagcctgatacccaacaacttcagcgtttgatagtgacaaattataaaggtgtccatttcccccaatggatgtctagtccttccctcaaatatttaaattctttagagttggatggttgcagaagttctttacaccttccagtgttgggaaaactaccttctctaagggatttaaccgtaagtgacatgactcaagtagaatacctatacgaggagtcttatgatgatggagtggttttcttggctctagaatatctgtccttaagtagcctgccaaacctagtaaggttatcaagggagtacggggaaaacatgttccctcacctttccaaactttatatatctgaatgtcctaaattatggggtttgcctagtcttccatctatCAATGCTCTATGGATACAAGGAAAATGCTTTCAAGACTTACAGAGTTCAATTCAGAAACTCAGTAATCTTAAATTCCTGGAATTCAGTCGTAATGATGAGTTAACATGCTTTCCAGATGGGATGCTACAAAACCTTGCTTCTCTAGAGACACTAGAGATTAGAAATCTCTCAAATCTTGAAGTACTCCCAACTGAAATCTTTAACCATAATGTTATCGAAAGTCTGTATCTCCGTGATTGCGAGAACCTCCAGGTTTTGATACAAGGGTTGCACTCTCTTGAGAAATTAGAAATTCGCAGTTGTCGCAAGTTCAGTGTGTCGGCAGGTTTACAACACCTAACATGTCTTCAATATTTGTCGATTGGCACATGCGATGTGGAAGGGTTGCATTATGCTTTACAACATATGACTTCCCTCAAGAAGTTATCATTAAGAAATCTTCCAAACTTGGAATCCTTGCCTGATTGCTTTGGAAACCTTCCCTTGCTTCAACGATTGCAGATTGACGAGTGTTCCAAGTTGAGGTGTCTTCCAACGAGCCTAAGCCTTAGCAAACTTGAGCGTTTGTACATCTGCAATTGCCCTATGTTAAAGAAGCGATGTGAGAAGGAGACAGGAGAGGACTGGTCAAAAATAGCACACATTCACGATGTTGTAGTGTGGTGA 3219 0.0842 MTEAILGVAFEKLSSLVGKELGRFLGFDRDMERLQSMFTAIKATLEDAEEKQFSSRTIKDWLQKLKDVALKLDDIMDECAYEELSLSNQVQSSCLSSFNPKHVVFRHKMSKKMERIKERLDEIAKEKEQLHLTERTLERRSEVRDWRQTFSSITEPQVYGRENDKNKIVDFMVGDASHSDNDLVVYPIKGPGGLGKTTLAQLVFNHERVVKHFELKIWVCVSEDFSLKRMIKSIIQAASGDACGDLELEPLQKKLHDLLQRKKYLLVLDDVWDEEQENWNRLKSVLSCGAKGTFVLVTTRLTKVATIMGTTDPHELSMLSDGNCWELFKHRAFGSDEVIQVEHENIGKEIVKKCGGLPLAATALGGLLRFERKEEAWLNVKESNVWSSSDNIMPALILSYLNLPIKLRQCFAYCAIFPKDERIEKQYLIELWMANGFISSNGMLNAQDVGDDVWHELHWRSLFQDLEIDELGKVTSFKLHDLVHDLAQSVAEEICCITRDTDVTTLSKRIYHLSDSTWGSHQLPKVKSLRTCIMLNYLKERFHSSVLKFYSLRVLDFVNRNKLSSSIGNLKHLRYLNLSYGKFKTLPESLCELWNLQILKLDRCNDLQKFPNSLIWLKALHQLSLSGCYSLSSLPPHIGKMSSLRSLTMYIVGKESGFLLEELEALNLKGELFIKNMEKVKSVMDAKKVNMSNKKLNLLRFKWARNEEFELQNNVEQILEVLQPDTQQLQRLIVTNYKGVHFPQWMSSPSLKYLNSLELDGCRSSLHLPVLGKLPSLRDLTVSDMTQVEYLYEESYDDGVVFLALEYLSLSSLPNLVRLSREYGENMFPHLSKLYISECPKLWGLPSLPSINALWIQGKCFQDLQSSIQKLSNLKFLEFSRNDELTCFPDGMLQNLASLETLEIRNLSNLEVLPTEIFNHNVIESLYLRDCENLQVLIQGLHSLEKLEIRSCRKFSVSAGLQHLTCLQYLSIGTCDVEGLHYALQHMTSLKKLSLRNLPNLESLPDCFGNLPLLQRLQIDECSKLRCLPTSLSLSKLERLYICNCPMLKKRCEKETGEDWSKIAHIHDVVVW 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00399 1072 Gene3D - 144 312 IPR027417 -
Cca09g00399 1072 Gene3D - 399 490 IPR036388 -
Cca09g00399 1072 SUPERFAMILY L domain-like 463 1064 - -
Cca09g00399 1072 PANTHER DISEASE RESISTANCE PROTEIN RP 32 844 IPR044974 GO:0006952
Cca09g00399 1072 PANTHER OS05G0414200 PROTEIN 32 844 - -
Cca09g00399 1072 CDD RX-CC_like 3 125 IPR038005 -
Cca09g00399 1072 SUPERFAMILY L domain-like 727 932 - -
Cca09g00399 1072 Coils Coil 106 140 - -
Cca09g00399 1072 PRINTS Disease resistance protein signature 185 200 - -
Cca09g00399 1072 PRINTS Disease resistance protein signature 258 272 - -
Cca09g00399 1072 PRINTS Disease resistance protein signature 354 368 - -
Cca09g00399 1072 PRINTS Disease resistance protein signature 894 910 - -
Cca09g00399 1072 Gene3D - 6 124 - -
Cca09g00399 1072 Coils Coil 31 51 - -
Cca09g00399 1072 Pfam NB-ARC domain 164 382 IPR002182 GO:0043531
Cca09g00399 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 414 IPR027417 -
Cca09g00399 1072 SMART LRR_typ_2 617 641 IPR003591 -
Cca09g00399 1072 SMART LRR_typ_2 570 593 IPR003591 -
Cca09g00399 1072 SMART LRR_typ_2 987 1010 IPR003591 -
Cca09g00399 1072 SMART LRR_typ_2 896 920 IPR003591 -
Cca09g00399 1072 SMART LRR_typ_2 871 895 IPR003591 -
Cca09g00399 1072 Gene3D Ribonuclease Inhibitor 854 1058 IPR032675 -
Cca09g00399 1072 Gene3D Ribonuclease Inhibitor 655 853 IPR032675 -
Cca09g00399 1072 Gene3D Ribonuclease Inhibitor 506 653 IPR032675 -
Cca09g00399 1072 Pfam Rx N-terminal domain 6 89 IPR041118 -
Cca09g00399 1072 Gene3D - 318 398 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00399 Cca-Chr9 9563192 9567542 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00399 182 638 WRKY Transcription Factor Family AT5G45050 24.675 4.22e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00399 - - ccaj:109806837 1323.92