Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00380 ATGGGGAAGCCAAGAGAAGCTGTTCTTTGTTTTGTGGCTTTGTTCTTGTTTTGGAGTTCTTCCAATGCTTTGCTTTCTCCCAAGGGAGTGAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTCTCTAGTGGATCCTCACGGTATTCTAGATAATTGGGATGGAGATGCAGTTGATCCATGCAGCTGGAATATGGTCACATGTTCCCCTGAGAACCTAGTTATTAGCCTGGGCATTCCCAGTCAAAATTTATCTGGTACTCTATCTCCAAGCATAGGAAACCTAACAAATCTTCAGATTGTGGTGCTACAGAATAATAACATAACTGGACCAATCCCTTCAGAGATAGGAAAACTTTCCAAGCTTCACACTCTTGATCTCTCTAATAACTTCTTCAATGGGGGAATTCCTCCCCCTTTGGGCCACCTGAAGAGCCTTCAGTACTTGAGGCTTAATAATAACAGTTTGGATGGAGAATTCCCAGAGTCACTAGCTAACATGGCACAACTTTCCTTTCTTGACTTGTCCTACAACAATCTGAGTGGCCCTGTACCTAAAATTTTGGCCAAATCATTCAGTATTGTAGGAAACCCCCTCGTCTGCGTGACAGAAAAAGAGAAAAACTGCCATGGGATGACACTTATGCCTATGTCAATGAACTTGAACACCACTGAGGGCAGAACAAAGGCTCACAAAATGGCCATAGCCTTTGGTTTGAGTCTTGGATGCCTCTGCTTGATAGTTCTTGGTTTTGGACTTGTTCTATGGAGGAGGCACAAACATAAACAACAGACATTCTTCGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTAAGAGAACTCCAGATTGCTACCAACAACTTCAGCAACAAAAACATTCTTGGAAAGGGTGGTTTTGGAAATGTCTACAAGGGAATTCTTTCAGATGGCACTCTTGTAGCAGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATCAGCTTAGCAGTGCACAGAAACCTTCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCTAATGGCAGTGTTGCATCCAGGCTCAAGGGTAAGCCAGTGCTAGACTGGGGCACAAGGAAGCAAATAGCCTTAGGAGCAGCAAGAGGACTACTATACCTTCATGAGCAATGTGATCCAAAGATAATCCATAGAGATGTGAAGGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTGGGAGATTTTGGGTTGGCAAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCACCAGAGTATCTTTCCACAGGGCAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGCATCCTGCTTCTTGAACTGATCACAGGCCAAAGGGCTCTAGAATTTGGAAAAGCAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATTCATCAAGAGAAGAAGCTTGAGTTGCTTGTTGACAAGGATCTGAAGAACAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAGGTGGCACTCTTGTGCACCCAATATCTTCCGGGCCACAGGCCCAAAATGTCGGAAGTGGTACGCATGCTTGAAGGTGATGGGCTTGCAGAGAAATGGGAAGCCTCTCAAAGTGCCGACACTACTAAGTGTAAGGCCCATGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCATTGTTAGTCCAGGCCATGGAACTCTCAGGCCCAAGGTGA 1857 0.4373 MGKPREAVLCFVALFLFWSSSNALLSPKGVNFEVQALMGIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPENLVISLGIPSQNLSGTLSPSIGNLTNLQIVVLQNNNITGPIPSEIGKLSKLHTLDLSNNFFNGGIPPPLGHLKSLQYLRLNNNSLDGEFPESLANMAQLSFLDLSYNNLSGPVPKILAKSFSIVGNPLVCVTEKEKNCHGMTLMPMSMNLNTTEGRTKAHKMAIAFGLSLGCLCLIVLGFGLVLWRRHKHKQQTFFDVKDRHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGNVYKGILSDGTLVAVKRLKDGNAIGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLKNNYDRIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTTKCKAHELSSSDRYSDLTDDSSLLVQAMELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00380 618 SMART serkin_6 298 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00380 618 SUPERFAMILY L domain-like 33 301 - -
Cca09g00380 618 SUPERFAMILY Protein kinase-like (PK-like) 275 568 IPR011009 -
Cca09g00380 618 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Cca09g00380 618 Pfam Leucine rich repeat 142 181 IPR001611 GO:0005515
Cca09g00380 618 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Cca09g00380 618 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Cca09g00380 618 ProSiteProfiles Protein kinase domain profile. 298 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00380 618 Pfam Protein kinase domain 299 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00380 618 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 4 618 - -
Cca09g00380 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 618 - -
Cca09g00380 618 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Cca09g00380 618 Gene3D Transferase(Phosphotransferase) domain 1 375 587 - -
Cca09g00380 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Cca09g00380 618 MobiDBLite consensus disorder prediction 580 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00380 Cca-Chr9 9048490 9053836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00380 6 618 Receptor kinase-like Gene Family AT5G16000 78.275 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca09g00380 Pkinase 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00380 - - gmx:100806650 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00380 09 9048490 9053836 Cca09g00380 09 9048490 9053836 ECH