Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00378 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCACCAGCAGCTGGTCACGTGTCTGCGACACGTGCCGCTCAGCCCCATGCACGCTCTACTGCCATGCAGACTCAGCGTACCTGTGTTCATCCTGTGATGCTCGCGTCCACGCAGCCAACCGTGTGGCCTCGAGACACGAGCGTGTGTGGGTGTGCGAAGCGTGCGAGCGTGCTCCCGCAGCGTTTCTATGCAAAGCTGACGCAGCTTCTCTTTGTTCTTCATGCGATGCTGACATCCACTCCGCAAACGTTCTCGCTAGCCGCCACCACCGCGTGCCTATTCTCCCCATCTCTGGGTCCCTCCTCTTCGTTGATCACGAACCAGATCATGAACCCGACAACAACGTCGGGTTCGCGAGCGTTCGTgaggtggaagaggaggaagaagaggtttttgatgagtacgaggatgaggTCGAAGCTGCTTCGTGGCTGTTGCCTCATCCTGTGAAGGTAAGTATAGAGGAGGAGAATGGCTGTGATGACGAGGGTTTTTTGTTTGGTGATGAGTATTTAGATTTTGACCTTGTGGATTGTAACTCGTGTGCTCACAACAACACGTTTAGCAACGTTTATCAGAACCAGCAGAATTACAATACTCTCCCTCAGAACTATGCAGTGGTTCCAGTTCAAGTGCCACAACAATCGCAGTGTTTTCAACCTGGTTTGGACTTTGACTCTTCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCAATGGATGTTGGCGTTGTACCAGAATCAACAGTAAGCGAAATCTCAATGTCTCACTCAAAGTCTTCAATAGGGACATGTGACCTATTTCCTCCCCTTCCCTTGCCTTCACATCTTATACCAATGGATAGAGAGGCCAGAGTCTTAAGATACAGAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGATTTGCAAAGAGAACTAATAATGTAGAAGCTGAAGTGGACCAAATGCTCTCCACAACACTATTCACTGAAGTTGGAGGTAGCATTTTTCCCTCCTTCTGA 1113 0.4663 MLKEGTNNVGGSTSSWSRVCDTCRSAPCTLYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANVLASRHHRVPILPISGSLLFVDHEPDHEPDNNVGFASVREVEEEEEEVFDEYEDEVEAASWLLPHPVKVSIEEENGCDDEGFLFGDEYLDFDLVDCNSCAHNNTFSNVYQNQQNYNTLPQNYAVVPVQVPQQSQCFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTVSEISMSHSKSSIGTCDLFPPLPLPSHLIPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTNNVEAEVDQMLSTTLFTEVGGSIFPSF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00378 370 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Cca09g00378 370 SMART bboxneu5 63 105 IPR000315 GO:0008270
Cca09g00378 370 SMART bboxneu5 15 62 IPR000315 GO:0008270
Cca09g00378 370 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Cca09g00378 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 370 IPR045281 GO:0009909
Cca09g00378 370 CDD Bbox1_BBX-like 19 62 - -
Cca09g00378 370 Pfam CCT motif 300 342 IPR010402 GO:0005515
Cca09g00378 370 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Cca09g00378 370 CDD Bbox1_BBX-like 62 105 - -
Cca09g00378 370 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Cca09g00378 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 15 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00378 Cca-Chr9 8974946 8976784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00378 1 370 C2C2-CO-like Transcription Factor Family AT3G02380 51.832 5.73e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca09g00378 zf-B_box 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00378 - - gmx:100782635 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00378 09 8974946 8976784 Cca09g00378 09 8974946 8976784 ECH
Cca09g00378 09 8974946 8976784 Cca07g02323 07 51776086 51778713 PCT