Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00376 ATGTCAATAACCTTGCTCACAAACTTTGAACGCGTTGAGGTACTTCTCAATGCACCAGACACCGTTAGTGTATCAAATAAAAGATGGCATTCAGCATTCGTTGCCATATATTGTTCCCGAGCCCTTATGTCACACTTCACTCccaataacaacacaaacaaaaccaaaccaaaggccttacctaaaccaaCATCATCTTTTACCGTGGTTGATTTGAACTCTCACCATTCCTTTGGTATAGACCAAACCACCCTCACTGATATTGTCAAAGAAAAAGACCTTCAAAGCCTTGAAAATTTTGGTGGGGTTGAAGGGGTGGCAACAGCCCTTGAAACCCACGTTGAGTATGGCATCAAAGGTGATGATGATGCTGAAGACATCACACGTAGGAAACAAGTGTTCGGTTCCAACACTTATGCCAAACCACCTTCCAAAGGTTTTTTCCACTTCGTGGTGGAAGCCTTTAAGGATGTCACTATTTTAATCCTTTTGGTTTGTGCTGCTTTTTCCCTTGGCTTTGGCATCAAGGAGCATGGCCTCAAAGAAGGTTGGTACGATGGTGGAAGCATCTTTGTTGCGGTGTTCATTGTCATTTCCTTGTCTTCAATAAGCAACTTCAGACAGAACAGACAGTTCGACAAGTTGTCTCAAGTGAGCAACGACATACAAATTGATGTGGTCAGAAGTGGGAGGCGCCAACACGTGTCAATCTTTGACATTGTGGTTGGTGATGTCATTTGCTTGAAGATTGGAGATCAAGTGCCAGCAGATGGGGTATTCATCGAAGGACATTCACTCAAAGTGGATGAGTCAAGCATGACAGGAGAGAGTGATCATGTTGAGATTGATAGACGTCGCCACCCTTTTTTGTTCTCTGGCACCAAGGTGGCTGATGGGTATGCTAAGATGCTTGTTACTTCAGTTGGTATGAACACAACATGGGGACAAATGATGAGTTCAATAAGCAGCGATATTGATGAGGAGACTCCTTTGCAAGAGAGGCTTAACAGACTTACATCATCCATTGGGAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTATTGGTTAGGTACTTCACAGGGAACACAAAGGATGAGAATGGAGAGAGGGAGTTCAATGGAGGCAGGACCAAGTTTGATGATATAATGAATGCTGTTGTGGGGATTGTTGCTGATGCAGTTACCATTGTTGTTGTTGCAATCCCTGAGGGTCTTCCACTGGCTGTGACTCTCACTTTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTATCTGCATGTGAGACAATGGGTTCTGCTACCACAATTTGCACTGATAAAACAGGCACTCTCACACTCAATGAGATGAAGGTGACCAAGTTCTGGCTTGGCCTAGAACCTCAAAGTGCATACTCAAAGGTTGCTCCATTTGTTCTGCAACTGATCCAAGAAGGGGTGGCTCTCAACACAACTGGTAGTGTGTGCAAGTCCAATGAACCAGGTTCTGAATTTGAGTTTTCAGGTAGTCCTACAGAAAAAGCAATTCTATCTTGGGCTGTTTTGGATTTGAAGATGGAGATGGAGCAGTTGACAAGAAGTTGTTCTATCATTCATGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGGAAGGCAGACAACACAGTTAATGCACACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGTTCAAGATACTATGATGCTTCTGGCATTGTGAAAGATCTTGACAATGATAGCATGTTGAAGTTTGAGCAAATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCGTTTGCACATGTAGAAGTAGCTGAGGAAGAGGTTGAAGATGAAGAAGGCAACACAATGGTGAAAGTGAAAGACAATGGTTTAACATTGTTAGGACTTGTGGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGGCAGCAGTGGAAGCTTGCCAACATGCTGGTGTGAATGTAAAAATGATCACAGGTGACAATGTTTTCACTGCAAGGGCCATAGCAACCGAATGCGGCATACTTCGACCTAATCAGGACACAGTTGGAGCAGTTGTTGAAGGAGAGGAATTTCGCAACTACACACATGAAGAGAGGTTGGAGAAGGTGGACAAAATCTGTGTGATGGCAAGGTCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGCCTGAAGCAGAAAGGACATGTAGTTGCTGTCACTGGTGATGGCACAAATGATGCACCAGCACTGAAGGAAGCTGATATTGGACTCTCTATGGGAATTCAAGGCACTGAAGTGGCCAAAGAGAGCTCAGATATTGTTATACTGGATGACAACTTTGCATCTGTGGTCACTGTCTTAAGGTGGGGAAGATGTGTTTACAACAACATTCAGAAGTTCATTCAGTTTCAGTTGACAGTGAATGTTGCAGCACTTGCAATCAACTTTGTGGCAGCAGTGTCAGCTGGGGAAGTGCCACTAACAGCAGTGCAACTATTATGGGTGAATTTGATCATGGACACACTTGGTGCCTTGGCTCTTGCAACTGAAAAGCCTACCAAGGAGTTGATGGACAAGCTACCTGTTGGTAGAACAAAACCTCTCATCACCAATGTCATGTGGAGGAACCTATTGGCTCAAGCTTTGTACCAGATAGCAGTTTTGCTGACCCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTGAATGACACATTGATTTTCAACACATTTGTGCTTTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTGTTCAAAGGCATACACAGGAGCAAGTTGTTTTTGGGCATTATTGGCTTCACAATAGTCCTTCAGGTGGTGATGGTTGAGTTTCTCAAGAAATTTGCTGGCACAGAGAGGCTAAATTGGGGGCAATGGGCTATTTGCATTGGTCTAGCTGCAGTTTCATGGCCAATTGGTTGGGTTGTGAAGTTGATACCTGTCCCAGATACACCATTGCTCAATTTTTTGAGCAAGAAGAAATGA 3069 0.4291 MSITLLTNFERVEVLLNAPDTVSVSNKRWHSAFVAIYCSRALMSHFTPNNNTNKTKPKALPKPTSSFTVVDLNSHHSFGIDQTTLTDIVKEKDLQSLENFGGVEGVATALETHVEYGIKGDDDAEDITRRKQVFGSNTYAKPPSKGFFHFVVEAFKDVTILILLVCAAFSLGFGIKEHGLKEGWYDGGSIFVAVFIVISLSSISNFRQNRQFDKLSQVSNDIQIDVVRSGRRQHVSIFDIVVGDVICLKIGDQVPADGVFIEGHSLKVDESSMTGESDHVEIDRRRHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISSDIDEETPLQERLNRLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDENGEREFNGGRTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWLGLEPQSAYSKVAPFVLQLIQEGVALNTTGSVCKSNEPGSEFEFSGSPTEKAILSWAVLDLKMEMEQLTRSCSIIHVETFNSKKKRSGVLLRRKADNTVNAHWKGAAEMVLKMCSRYYDASGIVKDLDNDSMLKFEQIIQGMAASSLRCIAFAHVEVAEEEVEDEEGNTMVKVKDNGLTLLGLVGIKDPCRPGVKAAVEACQHAGVNVKMITGDNVFTARAIATECGILRPNQDTVGAVVEGEEFRNYTHEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDKLPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIGFTIVLQVVMVEFLKKFAGTERLNWGQWAICIGLAAVSWPIGWVVKLIPVPDTPLLNFLSKKK 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00376 1022 SMART Cation_ATPase_N_a_2 99 175 IPR004014 -
Cca09g00376 1022 Pfam haloacid dehalogenase-like hydrolase 443 766 - -
Cca09g00376 1022 Pfam Cation transporter/ATPase, N-terminus 101 170 IPR004014 -
Cca09g00376 1022 Gene3D - 153 1006 - -
Cca09g00376 1022 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 453 650 IPR023299 GO:0000166
Cca09g00376 1022 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 82 1009 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca09g00376 1022 SFLD p-type atpase 428 805 IPR044492 -
Cca09g00376 1022 SUPERFAMILY Calcium ATPase, transduction domain A 223 320 IPR008250 -
Cca09g00376 1022 Gene3D - 125 322 - -
Cca09g00376 1022 PRINTS P-type cation-transporting ATPase superfamily signature 269 283 - -
Cca09g00376 1022 PRINTS P-type cation-transporting ATPase superfamily signature 446 460 - -
Cca09g00376 1022 PRINTS P-type cation-transporting ATPase superfamily signature 646 657 - -
Cca09g00376 1022 PRINTS P-type cation-transporting ATPase superfamily signature 668 678 - -
Cca09g00376 1022 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Cca09g00376 1022 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Cca09g00376 1022 PRINTS H+-transporting ATPase (proton pump) signature 599 617 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00376 1022 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00376 1022 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00376 1022 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 389 471 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00376 1022 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 725 833 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00376 1022 Pfam Cation transporting ATPase, C-terminus 837 1007 IPR006068 -
Cca09g00376 1022 Pfam E1-E2 ATPase 223 424 - -
Cca09g00376 1022 SFLD Haloacid Dehalogenase 428 805 - -
Cca09g00376 1022 PANTHER CATION TRANSPORTING ATPASE 11 996 - -
Cca09g00376 1022 PANTHER CALCIUM-TRANSPORTING ATPASE 11 996 - -
Cca09g00376 1022 SUPERFAMILY HAD-like 444 857 IPR036412 -
Cca09g00376 1022 CDD P-type_ATPase_Ca_PMCA-like 127 885 - -
Cca09g00376 1022 Gene3D - 456 653 IPR023299 GO:0000166
Cca09g00376 1022 Gene3D - 443 797 IPR023214 -
Cca09g00376 1022 SUPERFAMILY Calcium ATPase, transmembrane domain M 101 1009 IPR023298 -
Cca09g00376 1022 ProSitePatterns E1-E2 ATPases phosphorylation site. 448 454 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00376 Cca-Chr9 8895860 8899488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00376 12 1022 Primary Pumps ATPases AT3G22910 69.185 0.0 1351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00376 K01537 - gmx:100793918 1758.04