Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00372 ATGAGGAAACCTGATATGATGGGAAAAGATaacaaaatgaacaacaacaacaacaTTAAGAGTAAGCTAAGGAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAGCTGATAAGGTACATGATCACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATTAACTACTTGAGACCTGACCTCAAACGTGGTGCATTCTCACCCCAAGAGGAAGAACTCATCATTCACTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATCGCTGCACGTCTCCCTGGTCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACTCTCAAGAAAAGGTTGAAAATCAACAACTCAACTTCATCACCAAACAACAGTGACTCATCAGAGCCTAGAGATCATGTCATGGCTGGgatcatgcccatgaacaacgagcatgacctcatgaccatgtgcatgGACTCCTCCTCCTCAACATCATCATCATCCATGCATGCCAACAACATGGTTTTACCCGACCAATTTGACCCCTTTCCCTTGTTGTCCAACCGTTATGACATGACCGGTGCAGCCGGTTACCTTGACAACATGGCTTCTGCATGCTTAACCCAAGTTGGTATGACACATGATCATGATGGGGTTCATGGTGGTTATTATGGGACAATGTTGGAGCCTAATAAAACGGGGTTAGAAAACGACTTTTCCCTTCCTCCACTAGAAAGTACAAGCATTGAGGACAATAGTAATAGCACCCCAATTGATGTGAAAAGCCATAACAACCACCAGTTCAAGAATATTAGTTGCTTCAATAACACTATTCAAAGCCCCAACAACGTAGTTGTAGAGGACTTGTTTGGGTTTGCAAATCATGGCCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGCTTGATGCAAGACATTTCCTATTTTCCTTCTCTTGATTTCCAAGTTTAA 1002 0.4072 MRKPDMMGKDNKMNNNNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKINNSTSSPNNSDSSEPRDHVMAGIMPMNNEHDLMTMCMDSSSSTSSSSMHANNMVLPDQFDPFPLLSNRYDMTGAAGYLDNMASACLTQVGMTHDHDGVHGGYYGTMLEPNKTGLENDFSLPPLESTSIEDNSNSTPIDVKSHNNHQFKNISCFNNTIQSPNNVVVEDLFGFANHGQGENFRMGEWDFEGLMQDISYFPSLDFQV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00372 333 Gene3D - 79 149 - -
Cca09g00372 333 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Cca09g00372 333 CDD SANT 80 123 IPR001005 -
Cca09g00372 333 CDD SANT 28 72 IPR001005 -
Cca09g00372 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Cca09g00372 333 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Cca09g00372 333 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Cca09g00372 333 PANTHER TRANSCRIPTION FACTOR MYB83 1 333 - -
Cca09g00372 333 SUPERFAMILY Homeodomain-like 23 119 IPR009057 -
Cca09g00372 333 Gene3D - 22 78 - -
Cca09g00372 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Cca09g00372 333 PANTHER MYB DOMAIN PROTEIN 55 1 333 - -
Cca09g00372 333 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Cca09g00372 333 SMART sant 77 125 IPR001005 -
Cca09g00372 333 SMART sant 24 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00372 Cca-Chr9 8837936 8841677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00372 1 333 MYB Transcription Factor Family AT3G08500 47.658 5.77e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00372 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00372 K09422 - gmx:100813660 496.123