Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00369 atgtctcatcatcgtcatcgtcatcaccatcaccatcaccatTCCTCCAATCCCTTCGCGTCTTCCACTCACTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAATCTCGCTCGCGCCTCTGCTCCTGCGACGACACCGACATAAACCCCTTCTCCGGCGCCGTCTGCGACCTCCATCGCACGGACCAGGTGTTAGGGTTAGGGTTAGGGTTTGGCGTCGAAGTCCACGCCCCGAGCCAGAACGACGATGGCAATCGCGATAGCGTTTTCAATTTCGATGGTTCGGACGGGCTTAGGGTTGTAGGGTTTGGTTCGGATTCGGATTCGAGTAGCGAGGAGGGTGGGGATAGGGTTGGTGGCGGGTTTGATGATTTCGATGTTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAATGAGAGCTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAGTGAGAGAGAGGATTTGGGTTTGGTGGTTGATGAGGTTGAAATTGAAGGTGGTGATGATGGGAATTCGGTGGCGTCAGGGTTTACAAACGCCGCCgaggaggaggaggaggaggaggaggaggaggaCGCCGGGGAAGAGGCGCTGAGGTATCTTGAATGGGAAATTCTCTTGGCGGTTAACAATTCAGAGAGGAATGTTAATAATGCTGGTGGGTTGGAGCATGAGGGAAGTGTTGGTGGTGCTGATTTGGTAACAATTCAGGATGGTTATGTGTATGCGGCGGAGTATGATGTTTTGTTTGGGCAGTTTCTTGAGAATGAGAATGCTTTGAAGGGAAGCCCTCCTGCGGCGAAGAGCGTTGTGGAGAGCCTCCCGTTGGTGGAGCTGTCCAAGGAGGAGTTGGAGGGGAAGAGTGTGGCGTGTGCCATTTGCAAGGATGAGATTTTGTTGGAGGAGAAGGTCAGGAGGTTGCCCTGCTCTCATTGTTATCATGGGGATTGCATTTTTCCGTGGTTGAGCATTCGCAACACCTGCCCGGTTTGTCGGTTTGAGCTGCCCACCGATGATCCGGACTATGAGCAGAGGAAGGTCGTTCGCTCGGTCTTGTGTAAATATCAGTTTGCTTTGTCTCGTGTCCAACTGATGATGAGAACAAATCTTTTCTCTGTGTTCAGAATCATGATGTATAAAGTGCTGGCTATTTGTATATCTATCAAAGCTGTGATAGTGGGCAAAATTGCAGAAAATCATGACTGGAACAGGGCAGGAAAAGGGGGTTTTGGTTGTATGGGGTATAAGGTTAGTAGTGAAAATGGGAAGGGCAGACTGGGATTGGCTGGAAGTCTGGAACTTGTGTTGTGGGATAGAATAGGCATTCTAACTGCCTACTGTATTTTCATTTTCATAGCACCAGATCCTGTATTCTCGTGA 1416 0.4767 MSHHRHRHHHHHHHSSNPFASSTHSDSDSDSVSCFVTDLFESRSRLCSCDDTDINPFSGAVCDLHRTDQVLGLGLGFGVEVHAPSQNDDGNRDSVFNFDGSDGLRVVGFGSDSDSSSEEGGDRVGGGFDDFDVRLCWDSLCLEDQRTLNESFEWEEVEERVSEREDLGLVVDEVEIEGGDDGNSVASGFTNAAEEEEEEEEEEDAGEEALRYLEWEILLAVNNSERNVNNAGGLEHEGSVGGADLVTIQDGYVYAAEYDVLFGQFLENENALKGSPPAAKSVVESLPLVELSKEELEGKSVACAICKDEILLEEKVRRLPCSHCYHGDCIFPWLSIRNTCPVCRFELPTDDPDYEQRKVVRSVLCKYQFALSRVQLMMRTNLFSVFRIMMYKVLAICISIKAVIVGKIAENHDWNRAGKGGFGCMGYKVSSENGKGRLGLAGSLELVLWDRIGILTAYCIFIFIAPDPVFS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00369 471 MobiDBLite consensus disorder prediction 1 24 - -
Cca09g00369 471 Pfam Ring finger domain 303 344 IPR001841 -
Cca09g00369 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 350 IPR013083 -
Cca09g00369 471 SUPERFAMILY RING/U-box 289 351 - -
Cca09g00369 471 ProSiteProfiles Zinc finger RING-type profile. 303 344 IPR001841 -
Cca09g00369 471 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 375 - -
Cca09g00369 471 SMART ring_2 303 343 IPR001841 -
Cca09g00369 471 CDD RING-H2_RNF126_like 303 344 - -
Cca09g00369 471 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 11 375 - -
Cca09g00369 471 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00369 Cca-Chr9 8793742 8799871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00369 215 358 C3H Transcription Factor Family AT5G15820 51.389 9.69e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00369 - - gmx:100812037 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00369 09 8793742 8799871 Cca09g00369 09 8793742 8799871 ECH