Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00364 ATGACGATCGTAAGTGTAGAACCTAAGGCAAAGAAGACAAAATCAAGGAAGAGCAAGCCAGTTGCTGATGAGAAGGCACCTTTGATTCCCAAAACTCATGATGATTCAGGGTTTGATGATTTCAATGGTGCTTCATTTTCTGGGGCAGTTTTCAACTTGTCCACCACAATTATTGGTGCAGGGATCATGGCCTTGCCTGCAACACTGAAAAAGTTGGGGTTGGTGCCTGGTCTTCTGGCTATTATCTTCACTGCTTTTTTGACAGAGAAGTCAATTGGGTTCATGCTTAGGATTTCTAGAGCAGGGAATATTACTTCTTATGGGAACCTCGTGGGGGATTCCTTTGGAAAATTTGGAAAAGCTCTGGTGCAGATATGTGTTGTAGTCAACAACATTGGCATGCTGATTATTTACACTATTATTATTGGCGATGTGATTTCGGGAACAGCTTCTTCTAGTGGATCTCATCATTCTGGTGTACTTGAAGGGTGGTTTGGAGTTCATTGGTGGACAGGACGTACATTTATTCTTCTTTTCACAACAGTTGCTGTGTTTGCACCTTTATCCTGCTTCAAGCGAATTGATTCGTTAAGATACACTTCTGCATTGTCATTTGCCTTAGCAGTGGTGTTTCTTGTTATTGCTGTGGGAATCTCAATTTTCAAGATTGCAATTGGAGGCATTGGGATGCCTAGACTCTTCCCAGTAATTACTGATGTAGCCTCAGTTTTTGAACTGTTCACTGTAACTCCTGTGGTTGTGACAGCCTATCTATGCCACTTCAATGTAAACCCTATAGATAACGAACTTGAGGACTCCTCACAAATACATGGGATTGTGCGTACTTCCCTTGGTCTATGTGCTTCAGTGTACATGCTGATAAGCTTCTTTGGGTTCCTCCTATTTGGTGAAGGAACTCTTGATGATGTGCTTGCCAATTTTGACACTGATCTCGGAATTCCTTTTAGTGCTGTGCTTAATGATGCTGTTCGTTTTAGCTATGCTGCACATCTTGTTCTTGTATTTCCAGTTGTTTTCTTCTCTGTGAGGATCAACCTAGATGGTCTCCTGTTTCCATCAGCTAGGCCTTTGGTTCTGGATAACTTCAGATTTGTATCAATTACCATTGGCCTTATTGTTGCTGTCTTCTTGGGAGCCAATTTCATACCAAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACAGCTGCTGCATGTTTAGCATTCATATTTCCAGCCTCCATCACCCTTAGGGATCGGTACCATATTGCAACTAGAAAAGACAAGATTCTATCTATCTTTATGATAGCCCTCGCACTCTTGGCGAATGTTGTGGCTATATACAGTGATGCCTTTTCCTTGATCAAGAACAGTATAACTAAACGTGATTGA 1392 0.4167 MTIVSVEPKAKKTKSRKSKPVADEKAPLIPKTHDDSGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKKLGLVPGLLAIIFTAFLTEKSIGFMLRISRAGNITSYGNLVGDSFGKFGKALVQICVVVNNIGMLIIYTIIIGDVISGTASSSGSHHSGVLEGWFGVHWWTGRTFILLFTTVAVFAPLSCFKRIDSLRYTSALSFALAVVFLVIAVGISIFKIAIGGIGMPRLFPVITDVASVFELFTVTPVVVTAYLCHFNVNPIDNELEDSSQIHGIVRTSLGLCASVYMLISFFGFLLFGEGTLDDVLANFDTDLGIPFSAVLNDAVRFSYAAHLVLVFPVVFFSVRINLDGLLFPSARPLVLDNFRFVSITIGLIVAVFLGANFIPSIWDIFQFTGATAAACLAFIFPASITLRDRYHIATRKDKILSIFMIALALLANVVAIYSDAFSLIKNSITKRD 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00364 463 MobiDBLite consensus disorder prediction 1 27 - -
Cca09g00364 463 Pfam Transmembrane amino acid transporter protein 44 447 IPR013057 -
Cca09g00364 463 PANTHER AMINO ACID TRANSPORTER 7 459 - -
Cca09g00364 463 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 7 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00364 Cca-Chr9 8684022 8688715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00364 1 462 Amino Acid or Auxin Permease AAAP Family AT3G30390 63.362 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00364 K14207 - gmx:100799425 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00364 09 8684022 8688715 Cca07g02314 07 51654897 51658558 PCT