Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00351 ATGGTTCGTCAAGCTGATTTAGTTATCTTTGGTGTTTCTGTTGGTTTGGCCGTTGGAATTCTGATATCTTGCCTCATATTTTTCGGCATAAGGTGGTACAAGAAAAGTGCTCATCTTAGACAATCTACAAATGAGTCTAGTGTAACAACTCTTCCTATACGAACAAATGGATTGGGAACAAGTACCGACTTTAGTGCGTCACTCGATGGTTCCATAGCCATGTCAAGGTCAGAAAATCTTAAGAAAAATTCCCATTTTGCTTGGTGGAATCATCAAAACAAAGATCAGTTTGCTTCAGCATCAGGCATCCTAAAGTATTCGTACAAAGAAATTCAAAAGGCCACACAAAATTTCACGAATACCTTGGGACAAGGATCATTTGGCACAGTTTATAAAGCAACAATGCCTGCAGGGGAGGTTGTAGCAGTGAAGGTGCTCGCACCCAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTATTTCTTCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGACAACGTGTACTTGTTTATCAGTACATGAGTAATGGAAGTTTGGCAAATCTTTTGTATGGTGAAGAAAAGAAATTGAGTTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCCCACGGAATAGAATACCTTCATGAAGGAGCAATCCCACCTGTCATACATCGCGATTTAAAGTCTGCCAACATATTGCTAGACCACTCAATGAGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGAAATTCTGGTCTTAAAGGTACATATGGTTACATGGATCCAGCATACATTTCCACAAGCAAGTTAACAACAAAGAGTGACATATACAGTTTCGGTGTCATAGTTTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATTAACCTTGCTGCAATGGATCATGATGGTATAGATGAGATACTTGACAAGCACCTTGTGGGAAAATGCAACCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGGACACAAATGCTTGCACAAATCACCTAGGAAACGCCCCTCTATAGGTGAAGTTTCACAGTTCATATCAAGAATAAAGCAAAGGCGACAGCGCCACTTAACAGAAGATAACTTGTCATTTGCAAGCAATAACTTTTCTCGAGCTGTTAGTCGATTAGAAGATCGACAGGTTGAACTAAGTAGGATGTCCACCATTAACCTTGCAGAAACTGTATGA 1275 0.4016 MVRQADLVIFGVSVGLAVGILISCLIFFGIRWYKKSAHLRQSTNESSVTTLPIRTNGLGTSTDFSASLDGSIAMSRSENLKKNSHFAWWNHQNKDQFASASGILKYSYKEIQKATQNFTNTLGQGSFGTVYKATMPAGEVVAVKVLAPNSKQGEKEFQTEVFLLGRLHHRNLVNLVGYCVDKGQRVLVYQYMSNGSLANLLYGEEKKLSWDERLQIALDISHGIEYLHEGAIPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGVIVFELITAIHPHQNLMEYINLAAMDHDGIDEILDKHLVGKCNLEEVRQLAKIGHKCLHKSPRKRPSIGEVSQFISRIKQRRQRHLTEDNLSFASNNFSRAVSRLEDRQVELSRMSTINLAETV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00351 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Cca09g00351 424 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Cca09g00351 424 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Cca09g00351 424 Gene3D Transferase(Phosphotransferase) domain 1 192 401 - -
Cca09g00351 424 CDD STKc_IRAK 122 378 - -
Cca09g00351 424 ProSiteProfiles Protein kinase domain profile. 116 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00351 424 SMART serkin_6 116 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00351 424 PANTHER OS01G0750732 PROTEIN 9 419 - -
Cca09g00351 424 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Cca09g00351 424 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
Cca09g00351 424 SUPERFAMILY Protein kinase-like (PK-like) 95 380 IPR011009 -
Cca09g00351 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00351 Cca-Chr9 8357506 8362568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00351 102 375 Receptor kinase-like Gene Family AT3G19300 43.110 6.38e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Cca09g00351 PK_Tyr_Ser-Thr 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00351 - - gmx:100819995 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00351 09 8357506 8362568 Cca09g00351 09 8357506 8362568 ECH
Cca07g02303 07 51562211 51566230 Cca09g00351 09 8357506 8362568 PCT