Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00350 ATGTCCCCCAAGAAACTGCTTTGTAGCAAGGCTTGCAGATCAAATTTATCTGAGTTTGATGATGTCCAAGGCCACCCAGGTTTTGACAAACAGGGAACCAGATTTAAGCGCCTCATAAAAGACCAAAATCTCCACTCAGATGTTGAGGAGGGTATTAGACGTTTAGTACTTTGCTCTGGAAAGATTTACTATGAACTTGATGATCAACGAAGAAAGGTTGATGCAAAGGACGTTGCAATATGTAGAGTGGAACAACTTTGTCCTTTCCCTTACGACCTTGTCCAACGAGAGCTTAAACGATATCCAACTCTCGTTGGACAAGGTCGTAAGGGAAAGGACAAAGTTGTTCCACTCTACATATTGCAACGTCCTTTGCATCAACCTTTCTTCGTTGATCATCAAACGTGTTTGGGGCTTGTGGTGGTGGTGGAGGGGCTTGAGGGAAATGACGTCGTCAGAGCCCACCGCCACTCCACCTTCAAAACGGGCCTCAGGCCCACCCCCACCTTCGTCCCTTCCGTCGTCGCCACGCCCAATTCCTCCCTCCTTAGTGAAGAAGCCTTCAAAGGACTAAGCCAAGGCTTCGACCCAAACGACCACGACTTCGACCAAAATTCCCATTCCGAAACTGCCAAGCCCGACAAACTCGACATTTCCAAGCTCCACTTGCCCACGCACCTTGTCAAAACCCTCCGCACCCGAGGGATTACGCACCTTTTCCCTATTCAGAGAGCTGTGTTAGTACCTGCACTTGAAGGCAGAGATATCATTGCTCGAGCCAAGACCAGCACCGGTAAAACATTGGCGTTCGGGATTCCAATTATTAAAGGCCTCACTGAAGATGAACTTGCACCTTCTCACAGGCGGTCTAGTAAGCTTCCGAGAGCTTTGGTGCTTGCGCCTACAAGGGAGTTGGCCAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTATCTCAACACTGTTTGTGTCTACGAGGGTGTTTCTTATGTTACCCAGCAGAGTGCACTTTCACGTGGTGTGGACGTGGTGGTTGGGACTCCAGGGAGAATAATTGACTTGATAAATGGGAACAGTCTTAAGCTAGATGAAGTTATCACTTAA 1107 0.4824 MSPKKLLCSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNLHSDVEEGIRRLVLCSGKIYYELDDQRRKVDAKDVAICRVEQLCPFPYDLVQRELKRYPTLVGQGRKGKDKVVPLYILQRPLHQPFFVDHQTCLGLVVVVEGLEGNDVVRAHRHSTFKTGLRPTPTFVPSVVATPNSSLLSEEAFKGLSQGFDPNDHDFDQNSHSETAKPDKLDISKLHLPTHLVKTLRTRGITHLFPIQRAVLVPALEGRDIIARAKTSTGKTLAFGIPIIKGLTEDELAPSHRRSSKLPRALVLAPTRELAKQVEKEIKESAPYLNTVCVYEGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLDEVIT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00350 368 Gene3D - 192 368 IPR027417 -
Cca09g00350 368 Gene3D - 37 103 IPR042179 -
Cca09g00350 368 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 247 368 IPR014001 -
Cca09g00350 368 SMART ultradead3 235 366 IPR014001 -
Cca09g00350 368 Pfam DEAD/DEAH box helicase 240 366 IPR011545 GO:0003676|GO:0005524
Cca09g00350 368 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 156 366 - -
Cca09g00350 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 365 IPR027417 -
Cca09g00350 368 CDD DEADc 227 366 - -
Cca09g00350 368 Gene3D - 1 36 - -
Cca09g00350 368 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 156 366 - -
Cca09g00350 368 Pfam 2-oxoglutarate dehydrogenase C-terminal 31 103 IPR031717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00350 Cca-Chr9 8345891 8349559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00350 221 366 Eukaryotic Initiation Factors Gene Family AT3G13920 35.570 2.99e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00350 - K16911 ccaj:109814940 452.21