Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00344 ATGGGTTCTGTTTGCTGTTGTATGAGTTTTGATGATTTTGAAGATTATGTAAATCCAAATAGTACCGTATATAGGAACTGCGTGTGTCTCAGTTGCTTGGCACAGAACCTTTTGAATGTGTATGCATCAATATTCCGTCGAGGGGATGCACACTCAATCCCTTCATCTATTCAGGGGGCAGCATCTATGAATTCTTCTGCGTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCATTACCGTATGATGTAGAACCCAGATATTTTCGCTCGCAACGTGATGGACTAGTTTCAAGGCGGGAGAAGGGTTCAAGTCATTCTAATGAGGAAACAGAACCTCTAAGAAATGATGTAGATGTGGATCCAGAGTCTTTAAATTCAGGAGACAAGTGGAATGGAAGTGCCCGTGAAGCTGGATCAAAGGAATTCCATTCTAAGTCCTCCCTAAGAATTTCATCAACAAAATATTCAGCTGGAGCTGGCCTGATCTATGCATCATCAGAAGACGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACCAATTGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGACTTTCACTTGA 690 0.4159 MGSVCCCMSFDDFEDYVNPNSTVYRNCVCLSCLAQNLLNVYASIFRRGDAHSIPSSIQGAASMNSSASLDNSLSDMYRSPPRPLPYDVEPRYFRSQRDGLVSRREKGSSHSNEETEPLRNDVDVDPESLNSGDKWNGSAREAGSKEFHSKSSLRISSTKYSAGAGLIYASSEDEDVCPTCLEEYTKENPKIMTNCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTFT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00344 229 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Cca09g00344 229 SMART ring_2 177 217 IPR001841 -
Cca09g00344 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Cca09g00344 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Cca09g00344 229 SUPERFAMILY RING/U-box 172 224 - -
Cca09g00344 229 MobiDBLite consensus disorder prediction 98 128 - -
Cca09g00344 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 222 IPR013083 -
Cca09g00344 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Cca09g00344 229 MobiDBLite consensus disorder prediction 98 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00344 Cca-Chr9 8077420 8082659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00344 1 226 C3H Transcription Factor Family AT5G15790 61.207 8.93e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00344 - - gmx:100777068 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00344 09 8077420 8082659 Cca09g00344 09 8077420 8082659 ECH