Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00342 ATGGGGAGAGGTAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAACCGCCAAGTCACCTTCTCCAAACGCAGAACAGGATTGCGCAAGAAGGCTCATGAAATCTCTGTCCTCTGTGATGCTCAAGTAGCACTCATTGTCTTCAACTCCAAAGGAAAACTCTTCGACTTCTCCTCTGAATCCAGCATGGAAAATGTTCTGGAACGATACGAGAGACATGCCCATTTAGGGCAACTCGTTGGAGATGGTGATGAATCACAGGGAAACTGGTCCTTGCAATGCTTCAAGCTCACCGGAAAAGTTGAGGTCTTAGAGAGGAACTTAAGGAACTTTGTGGGACAAGATTTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTATAAAACGCATCCGAACTAGAAAGAATCAAGTTATGAACGAATCCATCTCATATCTCCAGAAAAAGGCAAAAGAATTGCAAGAGCAAAATGGCAAGCTTGCAAAGAAGATTAAGGAGAAAGGGAAGGAAGTGGCTGAACGTGCAAACTGCGGGCAAGAAACCTTAGGTCTAACATGCCCTCCAGAGTTACAACCACAACAAAGAGTACTAGTTCCTTCTTTATCAATCGGAGAGACTTTACGAGCAGCAGCACCTCTGGTGGAAGTGATTGAAGCACGAACAGTTCCTT 691 0.453 MGRGRVQLKQIENKINRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNSKGKLFDFSSESSMENVLERYERHAHLGQLVGDGDESQGNWSLQCFKLTGKVEVLERNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISYLQKKAKELQEQNGKLAKKIKEKGKEVAERANCGQETLGLTCPPELQPQQRVLVPSLSIGETLRAAAPLVEVIEARTVP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00342 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Cca09g00342 230 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g00342 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g00342 230 Coils Coil 124 177 - -
Cca09g00342 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g00342 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g00342 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g00342 230 PANTHER MADS BOX PROTEIN 1 216 - -
Cca09g00342 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca09g00342 230 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Cca09g00342 230 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 216 - -
Cca09g00342 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cca09g00342 230 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Cca09g00342 230 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g00342 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00342 Cca-Chr9 8045052 8060440 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00342 1 201 MADS-box Gene Family AT1G26310 57.073 1.82e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca09g00342 K-box 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00342 K09264 - gmx:100787971 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00342 09 8045052 8060440 Cca03g00686 03 12567539 12571832 ECH
Cca09g00342 09 8045052 8060440 Cca11g02044 11 46007708 46015437 ECH
Cca09g00342 09 8045052 8060440 Cca09g00342 09 8045052 8060440 ECH
Cca07g02283 07 51349164 51359559 Cca09g00342 09 8045052 8060440 ECH
Cca06g00519 06 15651090 15655890 Cca09g00342 09 8045052 8060440 ECH
Cca07g02283 07 51349164 51359559 Cca09g00342 09 8045052 8060440 PCT