Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00341 ATGTCAAACAGTAGTGGTGGAGAAGTGCCTTGGTCCAAAATGTTTGGCACATTTGCTCTATCAGTGGGAGCTGCTGTGGGTATGGAGTTTTGGGCTAGATGGGCTCATGAGGCTCTCTGGCATGCTTCCTTGTGGCACATGCATGAGTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGATGCAATTACACCCACTGTTGAATCTCACCAGGTAGTTTTCATATCTGGTGAGACTGGTTGCGAAAAGACTACGCAGCATGGTGTTGGATCATGCGGTGAGGCCTTAAATACTCAAgctgctgatgcagctgctgttgcagctgctgttgcGCACTCAAATAAAATCTTTGATGGAACCAAAGAAGGTGCTGGTCCGTCTAAATCAGGCGGTGATGCCATAACCAAAAAGGCAGCTGATGCAGCTGCTGATCCAACTTTAGAAAAATCTGTTGCACCTGTTGCGGATTCAGCACTTGCTACGGCTACTCATGATGAAGCAAATGGAGACAAGTTTACATCGGTTATATATAGAACCGATGTAAAATTATGCACAAATTTACATCGATTTTAA 582 0.4227 MSNSSGGEVPWSKMFGTFALSVGAAVGMEFWARWAHEALWHASLWHMHESHHRPREGPFELNDDAITPTVESHQVVFISGETGCEKTTQHGVGSCGEALNTQAADAAAVAAAVAHSNKIFDGTKEGAGPSKSGGDAITKKAADAAADPTLEKSVAPVADSALATATHDEANGDKFTSVIYRTDVKLCTNLHRF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00341 193 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 6 64 IPR045019 GO:0016491
Cca09g00341 193 Gene3D - 41 118 IPR027417 -
Cca09g00341 193 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 6 64 - -
Cca09g00341 193 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00341 Cca-Chr9 8012873 8014343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00341 6 63 Chloroplast and Mitochondria Gene Families AT4G25700 86.207 4.90e-33 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00341 K15746 - gmx:100785541 131.339