Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00337 ATGGATGCAATTAGTTGCATGGATGAGAGCACCACCACCGAATCCCTCTCCATGAGTCTTTCTCCGACGATGTCGTCAAAGAAAGCATTTGTTTCTGCTTCTCCGACGACATCGTCGAAGAAGACTTATGTCTCTCCGCCGCCACTGTCAGGCACGTTGTGTCGCGTCGGCAGTGGTGCGAGCGCAGTCGTGGACTCTGACAGTGGCGGCGGGGGCACCGAGGTGGAGTCTCGAAAACTCCCCTCGTCAAAGTACAAAGGCGTCGTCCCGCAGCTCAACGGCCGCTGGGGTGCGCAGATTTATGAAAAGCACCAGCGCGTCTGGCTCGGCACCTTCAACGAGGAAGATGAGGCCGCCAGGGCCTACGACGTCGCCGCCGTCCGCTTCCGCGGCAAGGACGCCGTCACGAATTTCAAAGGGCTCGCCGCCGCCGAGGACGACGACGGCGAAGCCGAGTTTCTCAACTCGCATTCGAAGTCCGAGATCGTGGACATGTTGAGGAAGCACACGTACAATGACGAGCTGGAGCAGAGCAAGCGGAgccgcggcgtggtacggcggcgtggcggagccggcggcggcggcggGAACTGTCTCTCCGGCGCGTGTGTTGCGAAGGCGCGTGAGCAATTGTTCGAGAAAGCGGTTACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTGCAGAGCGTTAACGGCGTTAACGTGAGCGCGACGGCGGCGAAGGGCGTTCTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGCTACGTGTTGACCAAGGGTTGGAGCCGGTTCGTCAAGGAGAAGAATCTGAAAGCCGGCGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAAGCAGCTTTACATCGATTGGAAGGCGAGGAATGTGGTGgttaatgttaatgttaatgttaatgtGAACAAGGAGGTTGGGTTGTTCGGACCGGTGGCCGAACCGGTCCAGATGGTTCGGCTCTTTGGTGTGAACATTTTGAAACTACCCGGTTCGGAGTGTATCGCCAATAGCAACAATACAAGTGGCGCTATTCCTGGGTGCTGCGGTGGCAAGAGAAGGGAAATGGAACTGTTCTCGTTAGAGTGTAGCAAGAAACCCAAGATTATTGGCGCTTTGTAA 1215 0.5325 MDAISCMDESTTTESLSMSLSPTMSSKKAFVSASPTTSSKKTYVSPPPLSGTLCRVGSGASAVVDSDSGGGGTEVESRKLPSSKYKGVVPQLNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAVRFRGKDAVTNFKGLAAAEDDDGEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGAGGGGGNCLSGACVAKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVNVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNVVVNVNVNVNVNKEVGLFGPVAEPVQMVRLFGVNILKLPGSECIANSNNTSGAIPGCCGGKRREMELFSLECSKKPKIIGAL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00337 404 SUPERFAMILY DNA-binding domain 83 139 IPR016177 GO:0003677
Cca09g00337 404 Pfam AP2 domain 83 131 IPR001471 GO:0003700|GO:0006355
Cca09g00337 404 Pfam B3 DNA binding domain 212 319 IPR003340 GO:0003677
Cca09g00337 404 Gene3D - 201 326 IPR015300 -
Cca09g00337 404 MobiDBLite consensus disorder prediction 1 20 - -
Cca09g00337 404 ProSiteProfiles AP2/ERF domain profile. 84 139 IPR001471 GO:0003700|GO:0006355
Cca09g00337 404 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 37 404 - -
Cca09g00337 404 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 37 404 IPR044800 GO:0003700
Cca09g00337 404 SUPERFAMILY DNA-binding pseudobarrel domain 210 316 IPR015300 -
Cca09g00337 404 CDD B3_DNA 211 307 IPR003340 GO:0003677
Cca09g00337 404 CDD AP2 83 138 IPR001471 GO:0003700|GO:0006355
Cca09g00337 404 SMART rav1_2 84 145 IPR001471 GO:0003700|GO:0006355
Cca09g00337 404 SMART B3_2 212 322 IPR003340 GO:0003677
Cca09g00337 404 Gene3D AP2/ERF domain 83 140 IPR036955 GO:0003700|GO:0006355
Cca09g00337 404 ProSiteProfiles B3 DNA-binding domain profile. 212 322 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00337 Cca-Chr9 7903331 7905181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00337 5 404 B3 DNA Binding Superfamily AT1G25560 58.924 2.11e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Cca09g00337 B3 5e-28 CL0405